View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_high_9 (Length: 462)
Name: NF16697_high_9
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 120 - 444
Target Start/End: Original strand, 161574 - 161873
Alignment:
| Q |
120 |
gatagtttgtctataaaacccataccatcagtagagtaaatcaatgctagtttctcatgtacttcagaagaagaaagaaggagtaataaatcattacata |
219 |
Q |
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| T |
161574 |
gatagtttgtctataaaacccataccatcaatagagtaaatcaatgctagtttctcatgtacttcagaa---gaaagaaggagtaataaatcattacata |
161670 |
T |
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| Q |
220 |
tgttgagagataaccattaatgcaacaattatcaacagagaagcctcctcattcatgaatctggcagaacaaattgcccaagacacagaacaaaccggag |
319 |
Q |
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| T |
161671 |
tgttgagagataaccattaatgcaacaattatcaacagagaagcctcctcattcatgaatctggcagaac---------------------aaaccggag |
161749 |
T |
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| Q |
320 |
aagagtgattagatctccttgttgaaagatgtaaacagagttttaatgagtttacctagtctatgtaaacagtatgcctaaactgagttttatgtctaca |
419 |
Q |
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| T |
161750 |
aagagtgattagatctccttgttgaaagatgtaaacatag-tttaatgagtttacctagtctatgtaaacagtatgcctaaactgagttttatgtctaca |
161848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 161447 - 161549
Alignment:
| Q |
22 |
aaacccaaaaagacaacatgaatataaaaacaacaaattagcatgaatacaatctcgaatggcatgaagcaaagttccaacctccacacaacacattaga |
121 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
161447 |
aaacccaaaaagacaacatcaatataaaaacaacaaattagcatgaatacagtctcgaatggcatgaagcaaagttctaacctccacacaacacattaga |
161546 |
T |
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| Q |
122 |
tag |
124 |
Q |
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||| |
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| T |
161547 |
tag |
161549 |
T |
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