View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_low_13 (Length: 434)
Name: NF16697_low_13
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Complemental strand, 41755172 - 41754764
Alignment:
| Q |
8 |
acatcatcaaattgtttatgttcatcaatggcaaagcaactcataatcatgcttctccctttgctttttctccttttcattttatcaggtattaacgcat |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41755172 |
acatcaccaaattgtttatgttcatcaatggcaaagcaactcataatcatgcttctccctttgctttttctccttttcattttatcaggtattaacgcat |
41755073 |
T |
|
| Q |
108 |
atattcatagccaacatcacaataattcaattaaatgtctttggtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttaca |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41755072 |
atattcatagccaacatcataataattcaattaaatgtctttggtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttaca |
41754973 |
T |
|
| Q |
208 |
gaagtagttgaagggactaagaaatcatatggtgtatacgacaacaacagcagctctgtaaaattgtttgtatttggagattcatatgctgacacaggaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41754972 |
gaagtagttgaagggactaagaaatcatatggtgtatacgac---aacagcaactctgtaaaattgtttgtatttggagattcatatgctgacacaggaa |
41754876 |
T |
|
| Q |
308 |
attttgtgggctcaccatcgtacaagcaaccttatggaatcacatttcctggtaaacctgctggaagattcagtaatggtcgtgttcttaccgattatat |
407 |
Q |
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| T |
41754875 |
attttgtgggctcaccatcgtacaagcaaccttatggaatcacatttcctggtaaacctgttggaagattcagtgatggtcgtgttcttaccgattatat |
41754776 |
T |
|
| Q |
408 |
tggtaactatct |
419 |
Q |
| |
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| T |
41754775 |
tggtaactatct |
41754764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 29 - 419
Target Start/End: Complemental strand, 41761069 - 41760674
Alignment:
| Q |
29 |
tcatcaatggcaaagcaactcataatcatgcttctccctttgctttttctccttttcattttatcaggtattaacgcatat-attcatagccaacatcac |
127 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| ||| ||| | ||||||||||| |
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| T |
41761069 |
tcatcaatggcgaagcaactcataatcatgcttcttcctttgctccttcttcttttcattttatcaggtatta-----tatcattaagagccaacatca- |
41760976 |
T |
|
| Q |
128 |
aataattcaattaaatgtctttggttt------------------attcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacaga |
209 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| || || |||||||||| ||||||||||| ||||||| |
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| T |
41760975 |
--taattcaattaaatgtctttggtttgttcatatttttttgtttattcatttttattggttttctattgtgtgacataaattaatgcaaattttacaga |
41760878 |
T |
|
| Q |
210 |
agtagttgaagggactaagaaatcatatggtgtatacgacaacaacagcagctctgtaaaattgtttgtatttggagattcatatgctgacacaggaaat |
309 |
Q |
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||| || |||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||| ||| |
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| T |
41760877 |
agtggtcgaagggactaagaaatcatatggtgtgtatgacaaaaac------tctgtaaaattgtttgtatttggagactcatatgctgatacaggcaat |
41760784 |
T |
|
| Q |
310 |
tttgtgggctcaccatcgtacaagcaaccttatggaatcacatttcctggtaaacctgctggaagattcagtaatggtcgtgttcttaccgattatattg |
409 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
41760783 |
tttatgggctcaccatcgtacaagcaaccttatggaatcacatttcctggtaaacctgctggaagattcagtgatggtcgtgttcttaccgattacattg |
41760684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 374
Target Start/End: Complemental strand, 41749311 - 41749211
Alignment:
| Q |
274 |
tttgtatttggagattcatatgctgacacaggaaattttgtgggctcaccatcgtacaagcaaccttatggaatcacatttcctggtaaacctgctggaa |
373 |
Q |
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|||||||||||||| ||||||| ||| |||||||||| | ||||||||| || |||| |||||||||||||| ||||||||||||||| |||||| |
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| T |
41749311 |
tttgtatttggagactcatatgttgatacaggaaattactttacctcaccatcatataagcttccttatggaatcacttttcctggtaaaccttctggaa |
41749212 |
T |
|
| Q |
374 |
g |
374 |
Q |
| |
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| |
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|
| T |
41749211 |
g |
41749211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 42225971 - 42225933
Alignment:
| Q |
267 |
aaaattgtttgtatttggagattcatatgctgacacagg |
305 |
Q |
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|||||||||||| ||||||||||||||||| |||||||| |
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| T |
42225971 |
aaaattgtttgtctttggagattcatatgcagacacagg |
42225933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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