View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_low_17 (Length: 369)
Name: NF16697_low_17
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 19129838 - 19130188
Alignment:
| Q |
18 |
attgaaatattatgaacaattcagatttagaaaccttgtttcttcaaagtgaaacaaacccatatgaagaagatgaccaaaaagtgatttttctttgtaa |
117 |
Q |
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| T |
19129838 |
attgaaatattatgaacaattcagatttagaaaccttgtttcttcaaagtgaaacaaacccatatgaagaagatgaccaaaaagtgatttttctttgtga |
19129937 |
T |
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| Q |
118 |
atctattgaattgaaaaactgtgatgaaaaagaagttctagagctaccccaatccaatgatgcctttagcatcattagataacccattaaataaaagggt |
217 |
Q |
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| T |
19129938 |
atctattgaattgaaaaactgtgatgaaaaagaagttctagatcta-cccaatccaacgatgcctttagcatcattagataacccattaaacaaaagggt |
19130036 |
T |
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| Q |
218 |
atttaaacaagtgaataaaaattcatgggctggttcaaaaattgaatctttaatttatttcactgctacaacatcttcagcaagcttcaactaatttaan |
317 |
Q |
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| T |
19130037 |
atttaaacaagtgaataaaaattcatgggctggttcaaaaattgaatctttaatttatttcactgctacaacatcttcaacaagcttcaactaatttaat |
19130136 |
T |
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| Q |
318 |
nnnnnnnnnnnnattcctgaaccggttgcacataaattccttcacgtttttc |
369 |
Q |
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| T |
19130137 |
ttttatttttttattcctaaaccggttgcacataaattccttcacgtttttc |
19130188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 37 - 304
Target Start/End: Complemental strand, 7756842 - 7756573
Alignment:
| Q |
37 |
ttcagatttagaaaccttgtttcttca---aagtgaaacaaacccatatgaagaagatgaccaaaaagtgatttttctttgtaaatctattgaattgaaa |
133 |
Q |
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| T |
7756842 |
ttcagattcagaaaccttgtttcttcttccaagtgaaacaaacccagaagaagaagataaacaaaaagtgatttttctgtctgaatcaattgaattgaaa |
7756743 |
T |
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| Q |
134 |
aactgtgatgaaaaagaagttctagagctaccccaatccaatgatgcctttagcatcattagataacccattaaataaaagggtatttaaacaagtgaat |
233 |
Q |
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| T |
7756742 |
aactgtgatgaaaaagaggttctagatctacca-aacccaacaatgcctttagcatcattagataacccattcaacaaaagggtatttgaacaagtgaac |
7756644 |
T |
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| Q |
234 |
aaaaattcatgggctggttcaaaaattgaatctttaatttatttcactgctacaacatcttcagcaagctt |
304 |
Q |
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| T |
7756643 |
aaatattcatgggctggttcaaaaattgaatctttcattgatttcactgctaaaacatcttcaacaagctt |
7756573 |
T |
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