View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_low_20 (Length: 346)
Name: NF16697_low_20
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 45238494 - 45238832
Alignment:
| Q |
1 |
aatttggtttgcacagtccctttgatttaggaaacaatacttttatatcaaggcattttttctaactctcttaagaatg-ctttataaattttggctttg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45238494 |
aatttggtttgcacagtccctttgatttaggaaacaatacttttatatcaaggcattttttctaactctcttaagaatggctttataaattttggctttg |
45238593 |
T |
|
| Q |
100 |
attacagtttaagaatagttcaatcacatttaaatgaagaattgattatttatgttcttatttacttttgctttaatgtttgtctccacaaatttcatgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45238594 |
attacagtttaagaatagttcaatcacatttaaatgaagaattgattatttatgttcttatttacttttgctttaatgtttgtctccacaaatttcatgt |
45238693 |
T |
|
| Q |
200 |
attcagtattctggagattgttcagaacttctgttattactccaatttatgaatgtgaagtagactgtctagaatgattaatagtattagtatctgtagt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45238694 |
attcagtattctggagattgttcagaacttctgttattactccaatttatgaatgtgaagtagactgtctagaatgattaatagtattagtatctgtagt |
45238793 |
T |
|
| Q |
300 |
tttctttcgtaaaatgatgattgtggtccgtctgtgctg |
338 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
45238794 |
tttctttcgtaaaatgatgattgtggtccgtctatgctg |
45238832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 7831514 - 7831864
Alignment:
| Q |
1 |
aatttggtttgcacagtccctttgatttaggaaacaatacttttatatcaaggcattttttctaactctcttaagaatgc-tttataaattttggctttg |
99 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7831514 |
aatttggttcgcacggtccctttgatttaggaaacaatagttttatatgaaggcattttttctaactctcttaagaatgaatttataaattttggctttg |
7831613 |
T |
|
| Q |
100 |
attacagtttaagaatagttcaatcacatttaaatgaagaattgattatttatgttcttatttacttttgctttaatg------------tttgtctcca |
187 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
7831614 |
gttacagtttaagaatggttcaatcacatttaaatgaagaattaattatttatgttcttatttacttctgctttaatgttcttatttacttttgtctcca |
7831713 |
T |
|
| Q |
188 |
caaatttcatgtattcagtattctggagattgttcagaacttctgttattactccaatttatgaatgtgaagtagactgtctagaatgattaatagtatt |
287 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7831714 |
caaatttcatgtattcagtattctggagattggtcagaacttctgttatcactccaatttatgaatgtgaagtagactgtctagaatgattaatggtatt |
7831813 |
T |
|
| Q |
288 |
agtatctgtagttttctttcgtaaaatgatgattgtggtccgtctgtgctg |
338 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||||| |||||| ||||| |
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|
| T |
7831814 |
agtatctgtagctttctttcataaaatgatgattgtggaccgtctatgctg |
7831864 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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