View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16697_low_21 (Length: 317)

Name: NF16697_low_21
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16697_low_21
NF16697_low_21
[»] chr3 (2 HSPs)
chr3 (7-240)||(1138366-1138599)
chr3 (132-173)||(28802764-28802805)
[»] chr2 (2 HSPs)
chr2 (136-173)||(3110531-3110568)
chr2 (132-169)||(28044709-28044746)
[»] chr1 (3 HSPs)
chr1 (132-173)||(6025961-6026002)
chr1 (136-171)||(1118941-1118976)
chr1 (128-173)||(26161596-26161641)
[»] chr5 (1 HSPs)
chr5 (135-167)||(28734169-28734201)
[»] chr7 (2 HSPs)
chr7 (127-170)||(32888960-32889003)
chr7 (135-171)||(7245942-7245978)
[»] chr6 (2 HSPs)
chr6 (137-171)||(2730831-2730865)
chr6 (135-172)||(26373115-26373152)
[»] chr4 (2 HSPs)
chr4 (132-170)||(207500-207538)
chr4 (136-173)||(47789196-47789233)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 1138599 - 1138366
Alignment:
Q  7 gagagatgaaaatggcattttttgaagctaatgtgtgaacgaaagatggggacatcacgacggtggttcaatatcgaccactctgtcgtagctgtatgaa 106  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1138599 gagaaatgaaaatggcattttttgaagctaatctgtgaatgaaagatggggacatcatgacggtggttcaatatcgaccactctgtcgtagctgtatgaa 1138500  T
Q  107 ggtaaataatccactgcaagagtggtatgctatttagtacaaagagttgtcaaatagtggctatagctaaagcattgtaacatagtataatttaatcaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1138499 ggtaaataatccactgcaagagtggtatgctatttagtacaaagagttgtcaaatagtggctatagctaaagcattgtaacatagtataatttaagcaaa 1138400  T
Q  207 cctctattttgggattaaaaacccacacaagata 240  Q
    |||||||||||| |||||||||| ||| ||||||    
T  1138399 cctctattttggaattaaaaaccgacaaaagata 1138366  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 28802805 - 28802764
Alignment:
Q  132 tatgctatttagtacaaagagttgtcaaatagtggctatagc 173  Q
    ||||||||||| || |||| ||||||||||||||||||||||    
T  28802805 tatgctatttaatataaagtgttgtcaaatagtggctatagc 28802764  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 3110568 - 3110531
Alignment:
Q  136 ctatttagtacaaagagttgtcaaatagtggctatagc 173  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3110568 ctatttagtacaaagcgttgtcaaatagtggctatagc 3110531  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 28044746 - 28044709
Alignment:
Q  132 tatgctatttagtacaaagagttgtcaaatagtggcta 169  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  28044746 tatgcgatttagtacaaagtgttgtcaaatagtggcta 28044709  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 6026002 - 6025961
Alignment:
Q  132 tatgctatttagtacaaagagttgtcaaatagtggctatagc 173  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  6026002 tatgctatttagtacaaaatgttgtcaaatagtggctatagc 6025961  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 1118941 - 1118976
Alignment:
Q  136 ctatttagtacaaagagttgtcaaatagtggctata 171  Q
    ||||||||||||||| ||||||||||||||||||||    
T  1118941 ctatttagtacaaagtgttgtcaaatagtggctata 1118976  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 26161641 - 26161596
Alignment:
Q  128 gtggtatgctatttagtacaaagagttgtcaaatagtggctatagc 173  Q
    |||||||||||||||||||||||  |||||||||||  ||||||||    
T  26161641 gtggtatgctatttagtacaaagtattgtcaaatagcagctatagc 26161596  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 28734201 - 28734169
Alignment:
Q  135 gctatttagtacaaagagttgtcaaatagtggc 167  Q
    |||||||||||||||||||||||||||||||||    
T  28734201 gctatttagtacaaagagttgtcaaatagtggc 28734169  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 32888960 - 32889003
Alignment:
Q  127 agtggtatgctatttagtacaaagagttgtcaaatagtggctat 170  Q
    |||| |||||||||||||||||||  ||||||||||||||||||    
T  32888960 agtgatatgctatttagtacaaagtattgtcaaatagtggctat 32889003  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 7245978 - 7245942
Alignment:
Q  135 gctatttagtacaaagagttgtcaaatagtggctata 171  Q
    |||||||||||||||| |||||||||||| |||||||    
T  7245978 gctatttagtacaaagtgttgtcaaatagcggctata 7245942  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 2730865 - 2730831
Alignment:
Q  137 tatttagtacaaagagttgtcaaatagtggctata 171  Q
    |||||||||||||| ||||||||||||||||||||    
T  2730865 tatttagtacaaagtgttgtcaaatagtggctata 2730831  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 26373115 - 26373152
Alignment:
Q  135 gctatttagtacaaagagttgtcaaatagtggctatag 172  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  26373115 gctatttagtacaaagtgttgtcaaatagtggttatag 26373152  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 207500 - 207538
Alignment:
Q  132 tatgctatttagtacaaagagttgtcaaatagtggctat 170  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  207500 tatgctatttagtacaaagtattgtcaaatagtggctat 207538  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 47789196 - 47789233
Alignment:
Q  136 ctatttagtacaaagagttgtcaaatagtggctatagc 173  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  47789196 ctatttagtacaaactgttgtcaaatagtggctatagc 47789233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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