View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_low_24 (Length: 301)
Name: NF16697_low_24
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 48478993 - 48479262
Alignment:
| Q |
14 |
agaccaaagactctccagttctgcttgacgtcaccggaatgatgtgcggcgggtgcgtctcccgagtcaaaaccattctctcctccgacgatcgagttga |
113 |
Q |
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| T |
48478993 |
agaccaaagactctccagttctgcttgacgtcaccggaatgatgtgcggcgggtgcgtctcccgagtcaaaaccattctctcctccgacgatcgagttga |
48479092 |
T |
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| Q |
114 |
ctctgtagttgtcaacatgttgactgaaaccgccgctgttaagcttaaaaagctcgaagaggaatctaccagcgttgcggatggacttgctcggagattg |
213 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48479093 |
ctctgtagttgtcaacatgttgactgaaaccgctgctgttaagcttaaaaagctcgaagaggaatctaccagcgttgcggatggacttgctcggagattg |
48479192 |
T |
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| Q |
214 |
acgggatgcgggtttccgacgaagaggagagaatcgggtttaggagtttcggagaatgtgaggaagtgga |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48479193 |
acgggatgcgggtttccgacgaagaggagagaatcgggtttaggagtttcggagaatgtgaggaagtgga |
48479262 |
T |
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