View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16697_low_26 (Length: 274)

Name: NF16697_low_26
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16697_low_26
NF16697_low_26
[»] chr6 (9 HSPs)
chr6 (16-274)||(26564884-26565142)
chr6 (17-274)||(26559316-26559577)
chr6 (183-268)||(26553232-26553317)
chr6 (36-94)||(31668789-31668847)
chr6 (19-78)||(8473509-8473569)
chr6 (20-94)||(9027485-9027560)
chr6 (17-90)||(4248870-4248944)
chr6 (21-78)||(8010281-8010338)
chr6 (54-94)||(21919982-21920022)
[»] chr1 (8 HSPs)
chr1 (159-273)||(50933628-50933742)
chr1 (20-77)||(45107548-45107605)
chr1 (17-80)||(46499938-46500002)
chr1 (20-94)||(30259574-30259649)
chr1 (17-78)||(44032083-44032145)
chr1 (36-81)||(45975861-45975906)
chr1 (60-93)||(49560687-49560720)
chr1 (38-94)||(47885114-47885170)
[»] chr8 (5 HSPs)
chr8 (20-94)||(35869745-35869820)
chr8 (17-119)||(14482083-14482188)
chr8 (41-93)||(31875668-31875720)
chr8 (60-94)||(8578530-8578564)
chr8 (46-94)||(12972764-12972812)
[»] chr4 (2 HSPs)
chr4 (20-94)||(24443946-24444021)
chr4 (23-91)||(44319861-44319929)
[»] chr5 (6 HSPs)
chr5 (20-93)||(7096214-7096288)
chr5 (36-94)||(26516206-26516264)
chr5 (21-119)||(20982223-20982324)
chr5 (18-93)||(6738492-6738568)
chr5 (36-94)||(29115317-29115375)
chr5 (36-119)||(29588762-29588846)
[»] chr7 (2 HSPs)
chr7 (26-81)||(47559702-47559757)
chr7 (36-81)||(3610844-3610889)
[»] chr3 (1 HSPs)
chr3 (21-79)||(41028939-41028998)
[»] chr2 (4 HSPs)
chr2 (20-82)||(17952788-17952851)
chr2 (36-79)||(33197343-33197386)
chr2 (44-94)||(43965242-43965292)
chr2 (18-77)||(31461363-31461423)
[»] scaffold0590 (1 HSPs)
scaffold0590 (20-77)||(1161-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (20-77)||(2756-2814)
[»] scaffold0024 (1 HSPs)
scaffold0024 (17-94)||(27484-27562)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 26564884 - 26565142
Alignment:
Q  16 ccaatttgactttattttgtttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataagacttaataaattgcttatcca 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26564884 ccaatttgactttattttgtttttgttatagaaatggcttatggataagcacttatatgataagtgcatatgctataagacttaataaattgcttatcca 26564983  T
Q  116 aacatggcatgaatgactttactttcttatacaaaacatatgaatattcatacttttgcaatcatgtaggtgttgtataaggcaatgaaaggtttaggga 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26564984 aacatggcatgaatgactttactttcttatacaaaacatatgaatattcatacttttgcaatcatgcaggtgttgtataaggcaatgaaaggtttaggga 26565083  T
Q  216 ctaatgataccacactcataagggtcatcgtaacaaggactgagattgatatgaaatac 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26565084 ctaatgataccacactcataagggtcatcgtaacaaggactgagattgatatgaaatac 26565142  T

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Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 26559316 - 26559577
Alignment:
Q  17 caatttgactttattttgtttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag-acttaat-aaattgcttatcc 114  Q
    |||||| |||||||| | |||||||| ||||||||| | ||| |||| || |||||||||| | ||| || |||||   ||||||| ||| || ||||||    
T  26559316 caattttactttattatatttttgttatagaaatggttaatgcataatcagttatatgatatgcgcaaatactatagccacttaattaaactgtttatcc 26559415  T
Q  115 aaacatggcatgaatgactttactttcttatacaaaacatatgaatattcata--cttttgcaatcatgtaggtgttgtataaggcaatgaaaggtttag 212  Q
    |||||||||||||||||||| | |||| ||||||||   | |  |||||||||  ||||||| | |||| |||| |||||||||||||||||||||||||    
T  26559416 aaacatggcatgaatgacttaattttcctatacaaattttttttatattcatatgcttttgccaccatgcaggtattgtataaggcaatgaaaggtttag 26559515  T
Q  213 ggactaatgataccacactcataagggtcatcgtaacaaggactgagattgatatgaaatac 274  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26559516 ggactaatgatcacacactcataagggtcattgtaacaaggactgagattgatatgaaatac 26559577  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 26553232 - 26553317
Alignment:
Q  183 aggtgttgtataaggcaatgaaaggtttagggactaatgataccacactcataagggtcatcgtaacaaggactgagattgatatg 268  Q
    |||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  26553232 aggtgttgtataaggcgatgaaaggtatggggactaatgatagcacactcataagggtcattgtaacaaggactgagattgatatg 26553317  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 31668789 - 31668847
Alignment:
Q  36 ttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag 94  Q
    ||||||| ||||||| ||||||  ||||||||||||||||||| ||| |||||||||||    
T  31668789 ttttgttatagaaatagcttatacataagcacttatatgataattgcttatgctataag 31668847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 8473569 - 8473509
Alignment:
Q  19 atttgactttattttgtttt-tgttgtagaaatggcttatggataagcacttatatgataa 78  Q
    |||||||||||||||||||| ||||||| |||| |||||| ||||| ||||||||| ||||    
T  8473569 atttgactttattttgttttatgttgtaaaaatagcttatagataaacacttatattataa 8473509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 9027560 - 9027485
Alignment:
Q  20 tttgactttattttgtttt-tgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag 94  Q
    |||||||||||||| | || | |||||||||| |||||| ||||||||||||||| |||||||   ||||||||||    
T  9027560 tttgactttattttatcttctattgtagaaatagcttatagataagcacttatataataagtgttcatgctataag 9027485  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 4248944 - 4248870
Alignment:
Q  17 caatttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgcta 90  Q
    ||||||||||||||||| | ||||||| | ||||| ||||||  |||||||||||||||| ||| || |||||||    
T  4248944 caatttgactttattttatcttttgttattgaaatagcttatatataagcacttatatgacaagcgcttatgcta 4248870  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 8010338 - 8010281
Alignment:
Q  21 ttgactttattttgtttttgttgtagaaatggcttatggataagcacttatatgataa 78  Q
    ||||||||||||| || ||||| ||||||| ||||||   ||||||||||||||||||    
T  8010338 ttgactttattttattgttgttatagaaatagcttatacctaagcacttatatgataa 8010281  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 21920022 - 21919982
Alignment:
Q  54 ttatggataagcacttatatgataagtgcatatgctataag 94  Q
    ||||| ||||||||||||||||||||| | |||||||||||    
T  21920022 ttatgcataagcacttatatgataagtacttatgctataag 21919982  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 50933742 - 50933628
Alignment:
Q  159 atattcatacttttgcaatcatgtaggtgttgtataaggcaatgaaaggtttagggactaatgataccacactcataagggtcatcgtaacaaggactga 258  Q
    ||||||| || |||| || |||| |||||||||||||||||||||||||||||||||||||||||   ||||| |||||||| ||  |||||||||||||    
T  50933742 atattcacacctttgtaaccatgcaggtgttgtataaggcaatgaaaggtttagggactaatgatgatacactgataagggtaattataacaaggactga 50933643  T
Q  259 gattgatatgaaata 273  Q
    |||||||||| ||||    
T  50933642 gattgatatggaata 50933628  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 45107605 - 45107548
Alignment:
Q  20 tttgactttattttgtttttgttgtagaaatggcttatggataagcacttatatgata 77  Q
    |||||||||||||| ||||| || ||||||| |||||| |||||||||||||||||||    
T  45107605 tttgactttattttatttttcttatagaaatagcttatagataagcacttatatgata 45107548  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 46499938 - 46500002
Alignment:
Q  17 caatttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgataagt 80  Q
    ||||||||||||||||| | |||| || ||||||| |||||| |||||||||||||||| |||||    
T  46499938 caatttgactttattttatcttttcttatagaaatagcttatagataagcacttatatgttaagt 46500002  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 30259574 - 30259649
Alignment:
Q  20 tttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag 94  Q
    |||||||||||||| | ||||||| ||||||| |||| || |||||||||| |||||||||||  |||| ||||||    
T  30259574 tttgactttattttatattttgttatagaaatagcttgtgcataagcacttctatgataagtgtgtatgttataag 30259649  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 44032083 - 44032145
Alignment:
Q  17 caatttgactttatttt-gtttttgttgtagaaatggcttatggataagcacttatatgataa 78  Q
    ||||||||||||||||| | ||||||| |||||| |||||||  |||| ||||||||||||||    
T  44032083 caatttgactttattttagcttttgttatagaaacggcttatacataaacacttatatgataa 44032145  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 45975906 - 45975861
Alignment:
Q  36 ttttgttgtagaaatggcttatggataagcacttatatgataagtg 81  Q
    ||||||| ||||||| |||||||  |||||||||||||||||||||    
T  45975906 ttttgttatagaaatagcttatgtgtaagcacttatatgataagtg 45975861  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 49560687 - 49560720
Alignment:
Q  60 ataagcacttatatgataagtgcatatgctataa 93  Q
    ||||||||||||||||| ||||||||||||||||    
T  49560687 ataagcacttatatgattagtgcatatgctataa 49560720  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 47885114 - 47885170
Alignment:
Q  38 ttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag 94  Q
    |||||||||||||  |||||  ||||||| |||||||||||| || |||||||||||    
T  47885114 ttgttgtagaaataacttattcataagcaattatatgataagcgcttatgctataag 47885170  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 35869820 - 35869745
Alignment:
Q  20 tttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag 94  Q
    ||||| |||||||| | ||||||||||||||| ||||||  ||||| ||||||||||||||||| |||||||||||    
T  35869820 tttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtgcttatgctataag 35869745  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 14482188 - 14482083
Alignment:
Q  17 caatttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag-acttaa-taaattgcttatc 113  Q
    ||||||||||||||||| | ||||||| ||||||| | ||||  ||||||||||||||||||||  |  |||||||||| |||||| ||||||| ||||     
T  14482188 caatttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataagcactaatgctataagaacttaattaaattgtttatt 14482089  T
Q  114 caaaca 119  Q
    ||||||    
T  14482088 caaaca 14482083  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 31875668 - 31875720
Alignment:
Q  41 ttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataa 93  Q
    ||||| |||| |||||| ||||||||||||||||||||| || ||||||||||    
T  31875668 ttgtataaatagcttatagataagcacttatatgataagcgcttatgctataa 31875720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 8578564 - 8578530
Alignment:
Q  60 ataagcacttatatgataagtgcatatgctataag 94  Q
    ||||||||||||||||||||||| |||||||||||    
T  8578564 ataagcacttatatgataagtgcttatgctataag 8578530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 12972812 - 12972764
Alignment:
Q  46 gaaatggcttatggataagcacttatatgataagtgcatatgctataag 94  Q
    ||||| ||||||  ||||||||||||||||||| ||| |||||||||||    
T  12972812 gaaatagcttatacataagcacttatatgataaatgcttatgctataag 12972764  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 24444021 - 24443946
Alignment:
Q  20 tttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag 94  Q
    ||||| |||||||| | ||||||||||||||| ||||||  ||||| ||||||||||||||||| |||||||||||    
T  24444021 tttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtgcttatgctataag 24443946  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 44319929 - 44319861
Alignment:
Q  23 gactttattttgtttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctat 91  Q
    ||||||||||| | ||| || ||||||| | ||||  || |||||||||||||||||||| ||||||||    
T  44319929 gactttattttatcttttttatagaaatagtttatacatgagcacttatatgataagtgcttatgctat 44319861  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 7096214 - 7096288
Alignment:
Q  20 tttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataa 93  Q
    |||||||||||||| | ||||||| ||||||| ||||||  |||||||||| |||||| | ||||||||||||||    
T  7096214 tttgactttattttatcttttgttatagaaatagcttatacataagcacttgtatgattaatgcatatgctataa 7096288  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 26516264 - 26516206
Alignment:
Q  36 ttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag 94  Q
    ||||||| ||||||| ||||||  |||||||||||||||||||| || |||||||||||    
T  26516264 ttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataag 26516206  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 20982223 - 20982324
Alignment:
Q  21 ttgactttattttgtt-tttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag-acttaat-aaattgcttatccaaa 117  Q
    ||||||||||||| |  |||||| ||||||| ||||||  ||||||||||||||||||||  | ||||||||||| ||||||| || ||| |||||||||    
T  20982223 ttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataagcacttaatgaagttgtttatccaaa 20982322  T
Q  118 ca 119  Q
    ||    
T  20982323 ca 20982324  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 6738492 - 6738568
Alignment:
Q  18 aatttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataa 93  Q
    |||||||||||||||||| |||| || | ||||| ||||||  ||||| ||||||||||||||||  ||||||||||    
T  6738492 aatttgactttattttgtcttttattattgaaatagcttatacataagtacttatatgataagtgtttatgctataa 6738568  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 29115317 - 29115375
Alignment:
Q  36 ttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag 94  Q
    ||||||||||||||| ||||||  |||||||||| |||||||| ||  |||||||||||    
T  29115317 ttttgttgtagaaatagcttatacataagcacttttatgataaatgtttatgctataag 29115375  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 29588846 - 29588762
Alignment:
Q  36 ttttgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag-acttaataaattgcttatccaaaca 119  Q
    ||||||| ||||||| ||||||  |||||||||||||| | |||||  |||||||||||  |||||| | ||| |||||||||||    
T  29588846 ttttgttatagaaatagcttatacataagcacttatataaaaagtgtttatgctataagcgcttaattatttgtttatccaaaca 29588762  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 47559702 - 47559757
Alignment:
Q  26 tttattttgtttttgttgtagaaatggcttatggataagcacttatatgataagtg 81  Q
    |||||||| ||||||||||||||||  |||||  ||||||||||||||||| ||||    
T  47559702 tttattttatttttgttgtagaaataacttattcataagcacttatatgattagtg 47559757  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 3610844 - 3610889
Alignment:
Q  36 ttttgttgtagaaatggcttatggataagcacttatatgataagtg 81  Q
    ||||||||||||||| ||||||  |||||||||||||||| |||||    
T  3610844 ttttgttgtagaaatagcttatacataagcacttatatgacaagtg 3610889  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 41028939 - 41028998
Alignment:
Q  21 ttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgataag 79  Q
    ||||||||||||| | ||||||| ||||||| ||||||  ||||||||||||||||||||    
T  41028939 ttgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataag 41028998  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 17952788 - 17952851
Alignment:
Q  20 tttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgataagtgc 82  Q
    |||||||||||||| | ||||||| ||||||| ||||||  |||||| ||||||||||||||||    
T  17952788 tttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataagtgc 17952851  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 33197343 - 33197386
Alignment:
Q  36 ttttgttgtagaaatggcttatggataagcacttatatgataag 79  Q
    ||||||| ||||||| |||||| |||||||||||||||||||||    
T  33197343 ttttgttatagaaatagcttatagataagcacttatatgataag 33197386  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 43965242 - 43965292
Alignment:
Q  44 tagaaatggcttatggataagcacttatatgataagtgcatatgctataag 94  Q
    ||||||| ||||||  |||| |||||||||||||||||| |||||||||||    
T  43965242 tagaaatagcttattcataaacacttatatgataagtgcttatgctataag 43965292  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 31461423 - 31461363
Alignment:
Q  18 aatttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgata 77  Q
    |||||||||||||||| | ||||||| ||||||| ||||||  |||| |||||||||||||    
T  31461423 aatttgactttattttatcttttgttatagaaatagcttatatataaccacttatatgata 31461363  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 1161 - 1219
Alignment:
Q  20 tttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgata 77  Q
    |||||||||||||| | ||||||| ||||||| ||||||  ||||||||||||||||||    
T  1161 tttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 1219  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 2814 - 2756
Alignment:
Q  20 tttgactttattttgt-ttttgttgtagaaatggcttatggataagcacttatatgata 77  Q
    |||||||||||||| | ||||||| ||||||| ||||||  ||||||||||||||||||    
T  2814 tttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 2756  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 27562 - 27484
Alignment:
Q  17 caatttgactttattttgtttt-tgttgtagaaatggcttatggataagcacttatatgataagtgcatatgctataag 94  Q
    ||||||||||||||||| | || |||| |||||||  |||||  ||||||||||| |||||||| || |||||||||||    
T  27562 caatttgactttattttatcttctgttatagaaataacttatacataagcacttacatgataagagcttatgctataag 27484  T

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