View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_low_28 (Length: 271)
Name: NF16697_low_28
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 42156017 - 42155801
Alignment:
| Q |
11 |
cacagagtccaacctttgttttctatgtttccaacctccttggattttcacctactggtagaccccaaaaccaaaatggtactttatatcaatggtacaa |
110 |
Q |
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| T |
42156017 |
cacagagtccaacctttgttttctatgtttccaacctccttggattttcacctactggtagaccccaaaaccaaaatggtactttat--caatggtacaa |
42155920 |
T |
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| Q |
111 |
aacaagaagtttgaagtaactttcctaaaatattagttgttagtttgttatattagttgctacaagatcactgtaaaaagtgttcattcatacattcatt |
210 |
Q |
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| T |
42155919 |
aacaagaagtttgaagtaactttcctaaaatattagttgttagtttgttatattagttgctacaagatcactgtaaaaagtgttcattcatacattcatt |
42155820 |
T |
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| Q |
211 |
tttaatcatcacactatca |
229 |
Q |
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| T |
42155819 |
tttaatcatcacactatca |
42155801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 42166080 - 42165932
Alignment:
| Q |
71 |
gaccccaaaaccaaaatggtactttatatcaatggtacaaaacaagaagtttgaagtaactttcctaaaatattagttgttagtttgttatattagttgc |
170 |
Q |
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| T |
42166080 |
gacccaaaaaccaaaacggtactttat--cagtggtgcaaaacaagaagtttgaagaagctttcatgaaacgttaatttgtattttgttatattagttac |
42165983 |
T |
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| Q |
171 |
tacaagatcactgtaaaaagtgttcattcatacattcatttttaatcatca |
221 |
Q |
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| T |
42165982 |
ttcatgatcaccgtaaaaagtgatcatacattcattcatttctaatcatca |
42165932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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