View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16697_low_30 (Length: 262)

Name: NF16697_low_30
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16697_low_30
NF16697_low_30
[»] chr2 (1 HSPs)
chr2 (18-212)||(3110420-3110613)
[»] chr7 (2 HSPs)
chr7 (120-165)||(32888971-32889016)
chr7 (130-182)||(1791416-1791468)
[»] chr3 (3 HSPs)
chr3 (121-165)||(8936736-8936780)
chr3 (130-165)||(1138433-1138468)
chr3 (130-171)||(38692426-38692467)
[»] chr1 (2 HSPs)
chr1 (121-165)||(6025952-6025996)
chr1 (132-165)||(1118943-1118976)
[»] chr6 (2 HSPs)
chr6 (115-165)||(2732971-2733021)
chr6 (132-165)||(2730831-2730864)
[»] chr8 (2 HSPs)
chr8 (121-165)||(26445499-26445543)
chr8 (120-148)||(34620045-34620073)
[»] chr4 (1 HSPs)
chr4 (129-165)||(47789198-47789234)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 3110420 - 3110613
Alignment:
Q  18 caaagggcatgggattagtttaaggaaaatttggttgatctgtaatagtgttgtccatcgtagattgcggaaaatagcggtttattcaaaacacttttag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3110420 caaagggcatgggattagtttaaggaaaatttggttgatctgtaatagtgttgtccatcgtagattgcggaaaatagcggtttattcaaaacac-tttag 3110518  T
Q  118 tattatagcgccgctatagccactatttgacaacgctttgtactaaattgtgtaatgcccaacaacaattgtttgttcaaattctgccatgttgt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3110519 tattatagcgccgctatagccactatttgacaacgctttgtactaaatagtgtaatgcccaacaacaattgtttgttcaaattctgccatgttgt 3110613  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 32889016 - 32888971
Alignment:
Q  120 ttatagcgccgctatagccactatttgacaacgctttgtactaaat 165  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||    
T  32889016 ttatagcgccgcaatagccactatttgacaatactttgtactaaat 32888971  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 1791416 - 1791468
Alignment:
Q  130 gctatagccactatttgacaacgctttgtactaaattgtgtaatgcccaacaa 182  Q
    ||||||||| |||||||||||  || |||||||||||||| ||||| ||||||    
T  1791416 gctatagccgctatttgacaatactctgtactaaattgtgaaatgcacaacaa 1791468  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 8936736 - 8936780
Alignment:
Q  121 tatagcgccgctatagccactatttgacaacgctttgtactaaat 165  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||    
T  8936736 tatagcgccgctatagccattatttgacaacactttgttctaaat 8936780  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 1138433 - 1138468
Alignment:
Q  130 gctatagccactatttgacaacgctttgtactaaat 165  Q
    |||||||||||||||||||||| |||||||||||||    
T  1138433 gctatagccactatttgacaactctttgtactaaat 1138468  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 38692426 - 38692467
Alignment:
Q  130 gctatagccactatttgacaacgctttgtactaaattgtgta 171  Q
    ||||||||| |||||||||||| ||||||||||||| |||||    
T  38692426 gctatagccgctatttgacaacactttgtactaaatcgtgta 38692467  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 6025952 - 6025996
Alignment:
Q  121 tatagcgccgctatagccactatttgacaacgctttgtactaaat 165  Q
    |||||||| ||||||||||||||||||||||  ||||||||||||    
T  6025952 tatagcgctgctatagccactatttgacaacattttgtactaaat 6025996  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 1118976 - 1118943
Alignment:
Q  132 tatagccactatttgacaacgctttgtactaaat 165  Q
    |||||||||||||||||||| |||||||||||||    
T  1118976 tatagccactatttgacaacactttgtactaaat 1118943  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 2733021 - 2732971
Alignment:
Q  115 tagtattatagcgccgctatagccactatttgacaacgctttgtactaaat 165  Q
    ||||||||||||||| |||||||  ||||||||||||  ||||||||||||    
T  2733021 tagtattatagcgcctctatagctgctatttgacaacattttgtactaaat 2732971  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 2730831 - 2730864
Alignment:
Q  132 tatagccactatttgacaacgctttgtactaaat 165  Q
    |||||||||||||||||||| |||||||||||||    
T  2730831 tatagccactatttgacaacactttgtactaaat 2730864  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 26445499 - 26445543
Alignment:
Q  121 tatagcgccgctatagccactatttgacaacgctttgtactaaat 165  Q
    ||||||||| ||||| |  ||||||||||||||||||||||||||    
T  26445499 tatagcgccactataactgctatttgacaacgctttgtactaaat 26445543  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 34620073 - 34620045
Alignment:
Q  120 ttatagcgccgctatagccactatttgac 148  Q
    |||||||||||||||||||||||||||||    
T  34620073 ttatagcgccgctatagccactatttgac 34620045  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 47789234 - 47789198
Alignment:
Q  129 cgctatagccactatttgacaacgctttgtactaaat 165  Q
    |||||||||||||||||||||||  ||||||||||||    
T  47789234 cgctatagccactatttgacaacagtttgtactaaat 47789198  T

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