View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_low_34 (Length: 249)
Name: NF16697_low_34
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 7662113 - 7661897
Alignment:
| Q |
19 |
aggaaatgctcatgttgttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtttggggctacacctgagatagct |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7662113 |
aggaaatgctcatgttgttgccattgcagctcttagtagccagaatccaggaggtatcactattggtaatgcaatgtttggggctacacctgagatagct |
7662014 |
T |
|
| Q |
119 |
agtgaagttcttgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattgggtgtgattttgatatttttgttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7662013 |
agtgaagttcttgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattgggtgtgattttgatatttttgttt |
7661914 |
T |
|
| Q |
219 |
gtttgtatgtttcattt |
235 |
Q |
| |
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||||||||||||||||| |
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| T |
7661913 |
gtttgtatgtttcattt |
7661897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 11680892 - 11680686
Alignment:
| Q |
30 |
atgttgttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtttggggctacacctgagatagctagtgaagttct |
129 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||||||| |||||||| |
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| T |
11680892 |
atgttgttgccattgctgctcttagtagccagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagctagcgaagttct |
11680793 |
T |
|
| Q |
130 |
tgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattgggtgtgattttga-tatttttgtttgtttgtatgt |
228 |
Q |
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||| |||||||||||||||||||| | ||||||||||||||||| |||||||| | ||||||| | || || | | ||||||||||||||||||| |
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| T |
11680792 |
cattatggcttttcaattggacaagaatgccatcaattacttgcagtcgaagttttaaaatattgggagggaattcaactgtttttgtttgtttgtatgt |
11680693 |
T |
|
| Q |
229 |
ttcattt |
235 |
Q |
| |
|
||||||| |
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|
| T |
11680692 |
ttcattt |
11680686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 11693847 - 11694013
Alignment:
| Q |
30 |
atgttgttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtttggggctacacctgagatagctagtgaagttct |
129 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||||||| |||||||| |
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| T |
11693847 |
atgttgttgccattgctgctcttactagcaagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagctagcgaagttct |
11693946 |
T |
|
| Q |
130 |
tgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattggg |
196 |
Q |
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|
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||| |
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|
| T |
11693947 |
cattaaggcttttcaattggacaagaatgccatcaattacttgcagtcgaagttttagaatattggg |
11694013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 11729245 - 11729044
Alignment:
| Q |
32 |
gttgttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtttggggctacacctgagatagctagtgaagttcttg |
131 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| ||||||||||| ||||||| ||||||||||||||||| |
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| T |
11729245 |
gttgttgccattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtgtttggggctgcacctgaaatagctagtgaagttctca |
11729146 |
T |
|
| Q |
132 |
ttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattgggtgtg-attttgatatttttgtttgtttgtatgttt |
230 |
Q |
| |
|
||||| ||||| ||||||||||||| || ||||||||||| ||| |||||||||| ||||||| | | ||| | | ||||||||||||||||||||| |
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|
| T |
11729145 |
ttaagtcttttaaattggacaagac---taccaattacttgctgtccaagttttagaatattgggagggaattcagctgtttttgtttgtttgtatgttt |
11729049 |
T |
|
| Q |
231 |
cattt |
235 |
Q |
| |
|
||||| |
|
|
| T |
11729048 |
cattt |
11729044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 30 - 234
Target Start/End: Complemental strand, 11720135 - 11719929
Alignment:
| Q |
30 |
atgttgttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtttggggctacacctgagatagctagtgaagttct |
129 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||| |||||||| || |
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| T |
11720135 |
atgttgttgctattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagcaagtgaagtgct |
11720036 |
T |
|
| Q |
130 |
tgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattgggtgtg--attttgatatttttgtttgtttgtatg |
227 |
Q |
| |
|
| ||||||||| |||||||||||| | ||||||||||| |||||||||||||||| ||||||| | | ||| | | |||||||||||||||||| |
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| T |
11720035 |
catcaaggcttttaaattggacaagaatgccatcaattacttacagtcaaagttttagaatattgggagggaaattcagctctttttgtttgtttgtatg |
11719936 |
T |
|
| Q |
228 |
tttcatt |
234 |
Q |
| |
|
||||||| |
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| T |
11719935 |
tttcatt |
11719929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 188
Target Start/End: Complemental strand, 11672005 - 11671847
Alignment:
| Q |
30 |
atgttgttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtttggggctacacctgagatagctagtgaagttct |
129 |
Q |
| |
|
||||| |||| || || |||||||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||||||| || |
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| T |
11672005 |
atgttattgcaatcgctgctcttagtagccagaatccgggagctatcactattggcaatgcagtgtttggtgctacacctgaaatagctagtgaagtgct |
11671906 |
T |
|
| Q |
130 |
tgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttaga |
188 |
Q |
| |
|
| ||||||||||||| |||| |||| | ||||| || |||||||| |||||||||| |
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|
| T |
11671905 |
tattaaggcttttcagctggagaagaatgccatcaactatttgcagtctaagttttaga |
11671847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 11712889 - 11712959
Alignment:
| Q |
36 |
ttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtttggggctaca |
106 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| |
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|
| T |
11712889 |
ttgccattgctgctcttagtagccagaatccaggagctatcactattggcaatgaagtgtttggggctaca |
11712959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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