View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_low_36 (Length: 248)
Name: NF16697_low_36
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 4118910 - 4118695
Alignment:
| Q |
28 |
cagtgtaggagacatcagtatcacattaagtaaataagtggcaggatagaagaactgcagtaacatattatataaa-----------gtactgtctaaga |
116 |
Q |
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| T |
4118910 |
cagtgtaggagacatcagtaccacattaagtaaataagtggcaggatagaagaactgcagtaacatattatataaatgtcttactatgtactgtctaaga |
4118811 |
T |
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| Q |
117 |
atgaaaagttattttgtttatcatgcatattttttattggtgtgccaagatacttgcattaagatttgtcactctattcctttctattttttatttctgg |
216 |
Q |
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| T |
4118810 |
atgaaaagttattttatttagcatgcatattttttattgatgtgccaagatgcttgcattaagatttgtcactcttttcctttctattttttatttatgg |
4118711 |
T |
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| Q |
217 |
aatttagttttgttgg |
232 |
Q |
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|||||||||||||||| |
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| T |
4118710 |
aatttagttttgttgg |
4118695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 4347094 - 4347196
Alignment:
| Q |
126 |
tattttgtttatcatgcatattttttattggtgtgccaagatacttgcattaagatttgtcactctattcctttctattttttatttctggaatttagtt |
225 |
Q |
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| T |
4347094 |
tattttgtttagcatgcatcttttttattgttgtgtcaggatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaatttggtt |
4347193 |
T |
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| Q |
226 |
ttg |
228 |
Q |
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||| |
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| T |
4347194 |
ttg |
4347196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 4121964 - 4121831
Alignment:
| Q |
31 |
tgtaggagacatcagtatcacattaagtaaataagtggcaggatagaagaactgcagtaacatattatataaagtactgtctaagaatgaaaagttattt |
130 |
Q |
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| T |
4121964 |
tgtaggagacatgagtattgcattgagtaaataaatgccaggaaagaagaactgcagtatcatgttatactatctaagaagtaagaatgaagaattattt |
4121865 |
T |
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| Q |
131 |
tgtttatcatgcatattttttattggtgtgccaa |
164 |
Q |
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| T |
4121864 |
tgtttagcatgcatatttttcattggtatgccaa |
4121831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 4363520 - 4363599
Alignment:
| Q |
126 |
tattttgtttatcatgcatattttttattggtgtgccaagatacttgcattaagatttgtcactctattcctttctattt |
205 |
Q |
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| T |
4363520 |
tattttgtttagcatgcatctttttcattggtgtggcaggatgcttgcattgagaattgtcattcttttcctttctattt |
4363599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 4131615 - 4131534
Alignment:
| Q |
147 |
tttttattggtgtgccaagatacttgcattaagatttgtcactctattcctttctattttttatttctggaatttagttttg |
228 |
Q |
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| T |
4131615 |
ttttgattggtgtgccaagattctttcattgagaattgtcattcttttcctttctatttttgattggtggaatttggttttg |
4131534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 4337985 - 4338035
Alignment:
| Q |
113 |
aagaatgaaaagttattttgtttatcatgcatattttttattggtgtgcca |
163 |
Q |
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||||||||| | |||||||||||| |||||||||||||||| ||||||||| |
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| T |
4337985 |
aagaatgaagaattattttgtttaacatgcatattttttatcggtgtgcca |
4338035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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