View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_low_39 (Length: 237)
Name: NF16697_low_39
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_low_39 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 31 - 237
Target Start/End: Complemental strand, 32685303 - 32685097
Alignment:
| Q |
31 |
ctttgtaggaatgagattcacatgcttctcttcccgtttcacgttatcctgtaatcaatgtgaggctgaggttgcaacttgcatgcatcatcgttcataa |
130 |
Q |
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| T |
32685303 |
ctttgtaggaatgagattgacatgcttctcttcccgtttcacgttatcctgtaatcaatgtgaggctgaggttgcaacttgcatgcatcatcgttcataa |
32685204 |
T |
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| Q |
131 |
tcacactcaagaaaattaacagtgagagaagcaaggtcttttacctacctttatggagacaggattattgtaaccagaaatcagacaagcaagcttcatt |
230 |
Q |
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| T |
32685203 |
tcacactcaagaaaattaacagtgagagaaacaaggtcttttacctacctttatggagacaggattattgtaaccagaaatcagacaagcaagcttcatt |
32685104 |
T |
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| Q |
231 |
tggcttc |
237 |
Q |
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||||||| |
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| T |
32685103 |
tggcttc |
32685097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32685351 - 32685319
Alignment:
| Q |
1 |
agcaagaggaggagccaagttgttaaaaaactt |
33 |
Q |
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| T |
32685351 |
agcaagaggaggagccaagttgttaaaaaactt |
32685319 |
T |
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