View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_low_4 (Length: 729)
Name: NF16697_low_4
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 11325781 - 11326084
Alignment:
| Q |
18 |
aagcaaaaattccgattgagggttatttgaagaaactatcgtctcgaagccttctttcatcacctgcataatatttcttccaatctccactgaagacgag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
11325781 |
aagcaaaaattccgattgagggttatttgaagaaactatcgtcttgaagccttctttcatcacctgcataatattgcttccaatctccactgaagatgag |
11325880 |
T |
|
| Q |
118 |
ttaaaagaatcctagtgtcatcattaagggaccaaagaagagattcttaaacctaggaagaaaatggtcgatagaccaaagaataatcttatcgttcgtt |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11325881 |
ttaaaagaatcctagtgtcatcattaaggaaccaaagaagagattcttaaacctaggaagaaaatggtcgatagaccaaagaataatcttatcgttcgtt |
11325980 |
T |
|
| Q |
218 |
cttgcatatattccagttcaataacattacaatgtaaatcaaccaaagccaaaatctactacctcgtaatttggcaccgtc-aaattattaagacaataa |
316 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11325981 |
cctgcatatattccagttcaataacattacaatgtaaatcaaccaaagccaaaatctactacctcgtaatttggcaccgtcaaaattattaagacaataa |
11326080 |
T |
|
| Q |
317 |
ccat |
320 |
Q |
| |
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|||| |
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| T |
11326081 |
ccat |
11326084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 11483802 - 11484105
Alignment:
| Q |
18 |
aagcaaaaattccgattgagggttatttgaagaaactatcgtctcgaagccttctttcatcacctgcataatatttcttccaatctccactgaagacgag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
11483802 |
aagcaaaaattccgattgagggttatttgaagaaactatcgtcttgaagccttctttcatcacctgcataatattgcttccaatctccactgaagatgag |
11483901 |
T |
|
| Q |
118 |
ttaaaagaatcctagtgtcatcattaagggaccaaagaagagattcttaaacctaggaagaaaatggtcgatagaccaaagaataatcttatcgttcgtt |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11483902 |
ttaaaagaatcctagtgtcatcattaaggaaccaaagaagagattcttaaacctaggaagaaaatggtcgatagaccaaagaataatcttatcgttcgtt |
11484001 |
T |
|
| Q |
218 |
cttgcatatattccagttcaataacattacaatgtaaatcaaccaaagccaaaatctactacctcgtaatttggcaccgtc-aaattattaagacaataa |
316 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11484002 |
cctgcatatattccagttcaataacattacaatgtaaatcaaccaaagccaaaatctactacctcgtaatttggcaccgtcaaaattattaagacaataa |
11484101 |
T |
|
| Q |
317 |
ccat |
320 |
Q |
| |
|
|||| |
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|
| T |
11484102 |
ccat |
11484105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 375 - 555
Target Start/End: Original strand, 11326082 - 11326262
Alignment:
| Q |
375 |
cataaccagagagagccccacatcagtttatccttgcatttgcttgtaaataaaaatcattctatccattgttttgtttcaagaataaaccaataatttg |
474 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11326082 |
cataaccagagagagccccacatcagtttatccatgcatttgcttgtaaataaaaatcattctatccattgttttgtttcaagaataaaccaataatttg |
11326181 |
T |
|
| Q |
475 |
gtcctaaattcctaatgtcaagtaaatcaatttattaatgattcttgttatggattgatcactgtattacatgtaaagaag |
555 |
Q |
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| T |
11326182 |
gtcctaaattcgtaatgtcaagtaaatcaatttattaatgattcttgttatggattgttcactgtattacatgtaaagaag |
11326262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 375 - 555
Target Start/End: Original strand, 11484103 - 11484283
Alignment:
| Q |
375 |
cataaccagagagagccccacatcagtttatccttgcatttgcttgtaaataaaaatcattctatccattgttttgtttcaagaataaaccaataatttg |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11484103 |
cataaccagagagagccccacatcagtttatccatgcatttgcttgtaaataaaaatcattctatccattgttttgtttcaagaataaaccaataatttg |
11484202 |
T |
|
| Q |
475 |
gtcctaaattcctaatgtcaagtaaatcaatttattaatgattcttgttatggattgatcactgtattacatgtaaagaag |
555 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11484203 |
gtcctaaattcgtaatgtcaagtaaatcaatttattaatgattcttgttatggattgttcactgtattacatgtaaagaag |
11484283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 580 - 714
Target Start/End: Original strand, 11326286 - 11326420
Alignment:
| Q |
580 |
caattttgtattgtttgacctcccaataaaccatcctatcttgcagaaccaaaattccatatttccatgattgtgtagctgtagtagacagacaatattc |
679 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11326286 |
caattttgtattgtttgacctcccaataaaccatcctatcttgcagaaccaaaattccatatttccatgattgtgtagctgtagtagacagacaatactc |
11326385 |
T |
|
| Q |
680 |
acaccttatgttattactaaaagcatgaagaaact |
714 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
11326386 |
acaccttatgttattactaaaagcatgaagaaact |
11326420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 580 - 714
Target Start/End: Original strand, 11484307 - 11484441
Alignment:
| Q |
580 |
caattttgtattgtttgacctcccaataaaccatcctatcttgcagaaccaaaattccatatttccatgattgtgtagctgtagtagacagacaatattc |
679 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11484307 |
caattttgtattgtttgacctcccaataaaccatcctatcttgcagaaccaaaattccatatttccatgattgtgtagctgtagtagacagacaatactc |
11484406 |
T |
|
| Q |
680 |
acaccttatgttattactaaaagcatgaagaaact |
714 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
11484407 |
acaccttatgttattactaaaagcatgaagaaact |
11484441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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