View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_low_40 (Length: 235)
Name: NF16697_low_40
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32685340 - 32685561
Alignment:
| Q |
1 |
cctcctcttgctgctgcctttctgctcttttctccaatttgcgccactccaggttcgttacctcctttgtcaaatactaaattgcccctgcttttttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685340 |
cctcctcttgctgctgcctttctgctcttttctccaatttgcgccactccaggttcgttacctcctttgtcaaatactaaattgcccctgcttttttatt |
32685439 |
T |
|
| Q |
101 |
taatttgctctactgccccatgacattcactctttttggtttttatagttggttagttagttgtacaaactagaaagtagtagaaatcaatgttggcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685440 |
taatttgctctactgccccatgacattcactctttttggtttttatagttggttagttagttgtacaaactagaaagtagtagaaatcaatgttggcttg |
32685539 |
T |
|
| Q |
201 |
ttaccttgtagtatgctcaaag |
222 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
32685540 |
ttaccttgtagtatgcttaaag |
32685561 |
T |
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