View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_low_44 (Length: 218)
Name: NF16697_low_44
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 11325781 - 11325965
Alignment:
| Q |
18 |
aagcaaaaattccgattgagggttatttgaagaaactatcgtctcgaagccttctttcatcacctgcataatatttcttccaatctccactgaagacgag |
117 |
Q |
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| T |
11325781 |
aagcaaaaattccgattgagggttatttgaagaaactatcgtcttgaagccttctttcatcacctgcataatattgcttccaatctccactgaagatgag |
11325880 |
T |
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| Q |
118 |
ttaaaagaatcctagtgtcatcattaagggaccaaagaagagattcttaaacctaggaagaaaatggtcgatagaccaaagaata |
202 |
Q |
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| T |
11325881 |
ttaaaagaatcctagtgtcatcattaaggaaccaaagaagagattcttaaacctaggaagaaaatggtcgatagaccaaagaata |
11325965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 11483802 - 11483986
Alignment:
| Q |
18 |
aagcaaaaattccgattgagggttatttgaagaaactatcgtctcgaagccttctttcatcacctgcataatatttcttccaatctccactgaagacgag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
11483802 |
aagcaaaaattccgattgagggttatttgaagaaactatcgtcttgaagccttctttcatcacctgcataatattgcttccaatctccactgaagatgag |
11483901 |
T |
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| Q |
118 |
ttaaaagaatcctagtgtcatcattaagggaccaaagaagagattcttaaacctaggaagaaaatggtcgatagaccaaagaata |
202 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11483902 |
ttaaaagaatcctagtgtcatcattaaggaaccaaagaagagattcttaaacctaggaagaaaatggtcgatagaccaaagaata |
11483986 |
T |
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