View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16697_low_9 (Length: 473)

Name: NF16697_low_9
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16697_low_9
NF16697_low_9
[»] chr8 (2 HSPs)
chr8 (31-470)||(565860-566296)
chr8 (290-318)||(41417-41445)
[»] chr6 (9 HSPs)
chr6 (18-196)||(844696-844868)
chr6 (18-196)||(869979-870152)
chr6 (405-459)||(33350839-33350894)
chr6 (290-338)||(6817068-6817116)
chr6 (218-300)||(31001348-31001429)
chr6 (216-265)||(6816997-6817046)
chr6 (302-334)||(5933984-5934016)
chr6 (302-338)||(8293787-8293823)
chr6 (223-286)||(5933900-5933963)
[»] chr1 (1 HSPs)
chr1 (244-454)||(32920526-32920726)
[»] chr7 (3 HSPs)
chr7 (229-364)||(43290961-43291096)
chr7 (397-448)||(43291119-43291171)
chr7 (225-317)||(20061091-20061184)
[»] chr5 (4 HSPs)
chr5 (217-379)||(32249190-32249352)
chr5 (235-317)||(7860261-7860342)
chr5 (300-379)||(32236688-32236768)
chr5 (301-333)||(19947546-19947578)
[»] chr4 (4 HSPs)
chr4 (243-379)||(33841230-33841368)
chr4 (397-454)||(33841375-33841433)
chr4 (421-454)||(23442360-23442393)
chr4 (397-449)||(37161812-37161865)
[»] chr2 (8 HSPs)
chr2 (229-379)||(18834797-18834947)
chr2 (223-379)||(1759340-1759504)
chr2 (229-312)||(8489639-8489721)
chr2 (301-338)||(11158474-11158511)
chr2 (405-457)||(11158368-11158421)
chr2 (316-349)||(705681-705714)
chr2 (405-453)||(8489906-8489955)
chr2 (405-454)||(18834733-18834782)
[»] chr3 (2 HSPs)
chr3 (229-317)||(34106348-34106436)
chr3 (397-453)||(445436-445493)
[»] scaffold0140 (1 HSPs)
scaffold0140 (244-334)||(17018-17110)
[»] scaffold0079 (1 HSPs)
scaffold0079 (217-316)||(7505-7605)


Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 31 - 470
Target Start/End: Complemental strand, 566296 - 565860
Alignment:
Q  31 aatctaatggttggtgaagatggagaggaaaggaaattccccaaagaatggaaaagttgaaaggtgatgccattgatgctttgaagaaaaatggatcttc 130  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566296 aatctaatggttggtgaagatggagaggaaaggaaattcgccaaagaatggaaaagttgaaaggtgatgccattgatgctttgaagaaaaatggatcttc 566197  T
Q  131 aacaacaactcttacacaattggcattaaaatggaaaaggtttagagtcacatctaggaacttaaactgatattggcccgatggtgggtaccggtacggg 230  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  566196 aacaagaactcttacacaattggcattaaaatggaaaaggtttagagtcacatctaggaacttaaactgatattggcccgatgatgggtacaggtacggg 566097  T
Q  231 tacgtaatacaacaaattttaaaaaatgaaggtacaagtacgttgatataaaacatcggaaaaaagatttttcaagtgaattactacacttctatcatca 330  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  566096 tacataatacaacaaattttaaaaaatgaaggtacaagtacgttgatataaaacatcggaaaaaagatttttcaagtgaattactacacttctaccatca 565997  T
Q  331 tgttgcttcagcgatttacttattgtgtgcatccttctactattttcatnnnnnnnnnnnnnnnnncaagagatagaattaaaatacagtaaaaagcaaa 430  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||                 |||||||||||||||||||||| |||||||||||    
T  565996 tgttgcttcagcgatttacttattttgtgcacccttctactattttcat---aaaaaaaaaaaaaacaagagatagaattaaaatacaataaaaagcaaa 565900  T
Q  431 ataattttggttatttttccaccgtccatacacctttgct 470  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  565899 ataattttggttatttttccaccgcccatacacttttgct 565860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 41445 - 41417
Alignment:
Q  290 aaaaaagatttttcaagtgaattactaca 318  Q
    |||||||||||||||||||||||||||||    
T  41445 aaaaaagatttttcaagtgaattactaca 41417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 844868 - 844696
Alignment:
Q  18 taaggttgtaaagaatctaatggttggtgaagatggagaggaaaggaaattccccaaagaatggaaaagttgaaaggtgatgccattgatgctttgaaga 117  Q
    |||||||||||||||| ||||||||||||||||     ||||||||||||||  |||||||||||||||||||||||| |||| ||||||||||| |||     
T  844868 taaggttgtaaagaatttaatggttggtgaaga-----aggaaaggaaattcatcaaagaatggaaaagttgaaaggtaatgctattgatgctttaaagg 844774  T
Q  118 aaaatggatcttcaacaacaactcttacacaattggcattaaaatggaaaaggtttagagtcacatctaggaacttaaa 196  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||| | ||| |||| | ||||||||||||||||||||    
T  844773 aaaatggatcttcaacaatgactcttacacatttggcattaaaattggaaa-gtttggggtcacatctaggaacttaaa 844696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 870152 - 869979
Alignment:
Q  18 taaggttgtaaagaatctaatggttggtgaagatggagaggaaaggaaattc-cccaaagaatggaaaagttgaaaggtgatgccattgatgctttgaag 116  Q
    |||||||||||||||| | ||||||||||||||     |||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||    
T  870152 taaggttgtaaagaatttgatggttggtgaaga-----aggaaaggaaattcacccaaagaatggaaaagttgaaaggtaatgctattgatgctttaaag 870058  T
Q  117 aaaaatggatcttcaacaacaactcttacacaattggcattaaaatggaaaaggtttagagtcacatctaggaacttaaa 196  Q
     ||||||||||||| ||||  ||||||||||| ||||||||||||||||||| |||| |  ||||||| |||||||||||    
T  870057 gaaaatggatcttctacaatgactcttacacatttggcattaaaatggaaaa-gtttgggatcacatcaaggaacttaaa 869979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 33350839 - 33350894
Alignment:
Q  405 agaattaaaatacagta-aaaagcaaaataattttggttatttttccaccgtccat 459  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  33350839 agaattaaaatacaatataaaagcaaaataattttggttatttttccaccgtccat 33350894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 6817068 - 6817116
Alignment:
Q  290 aaaaaagatttttcaagtgaattactacacttctatcatcatgttgctt 338  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  6817068 aaaaaagatttttcaagtgaattactacatttctatcattatgttgctt 6817116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 300
Target Start/End: Complemental strand, 31001429 - 31001348
Alignment:
Q  218 gtaccggtacgggtacgtaatacaacaaattttaaaaaatgaaggtacaagtacgttgatataaaacatcggaaaaaagattt 300  Q
    |||| ||||| |||||||||||  | ||||||| ||||| ||||||||| |||| ||||||||||||||  ||||||||||||    
T  31001429 gtacgggtaccggtacgtaatatgataaatttttaaaaaggaaggtacaggtaccttgatataaaacat-agaaaaaagattt 31001348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 6816997 - 6817046
Alignment:
Q  216 gggtaccggtacgggtacgtaatacaacaaattttaaaaaatgaaggtac 265  Q
    ||||||||||||  |||| |||||| ||||||||||||||||||||||||    
T  6816997 gggtaccggtaccagtacataatacgacaaattttaaaaaatgaaggtac 6817046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 5933984 - 5934016
Alignment:
Q  302 tcaagtgaattactacacttctatcatcatgtt 334  Q
    |||||||||||||||||||||||||||||||||    
T  5933984 tcaagtgaattactacacttctatcatcatgtt 5934016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 8293787 - 8293823
Alignment:
Q  302 tcaagtgaattactacacttctatcatcatgttgctt 338  Q
    |||||||||||||| ||||||||||||||||||||||    
T  8293787 tcaagtgaattactccacttctatcatcatgttgctt 8293823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 5933900 - 5933963
Alignment:
Q  223 ggtacgggtacgtaatacaacaaattttaaaaaatgaaggtacaagtacgttgatataaaacat 286  Q
    ||||| ||||||||||||  |||||||||||||||||||||||  |||| ||| ||||| ||||    
T  5933900 ggtaccggtacgtaatacggcaaattttaaaaaatgaaggtacgggtacattggtataatacat 5933963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 244 - 454
Target Start/End: Original strand, 32920526 - 32920726
Alignment:
Q  244 aaattttaaaaaatgaaggtacaagtacgttgatataaaacatcgg-aaaaaagatttttcaagtgaattactacacttctatcatcatgttgcttcagc 342  Q
    ||||||||||||||||||||||| |||| |||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||| || ||     
T  32920526 aaattttaaaaaatgaaggtacatgtacattgatataaaacatcaacaaaaaagatttttcaagtgaattactacacttctattatcatgttgttttaga 32920625  T
Q  343 gatttacttattgtgtgcatccttctactattttcatnnnnnnnnnnnnnnnnncaagagatagaattaaaatacagtaaaaagcaaaataattttggtt 442  Q
    | ||||||| || |||||| ||||| ||||||||||                  ||||||| |||||||||||||| ||||||| |||||||||||||||    
T  32920626 gttttactttttttgtgcacccttcaactattttca-----------ccaaaagcaagagagagaattaaaatacaataaaaaggaaaataattttggtt 32920714  T
Q  443 atttttccaccg 454  Q
    ||||||||||||    
T  32920715 atttttccaccg 32920726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 229 - 364
Target Start/End: Original strand, 43290961 - 43291096
Alignment:
Q  229 ggtacgtaatacaacaaattttaaaaaatgaaggtacaagtacgttgatataaaacatcggaaaaaagatttttcaagtgaattactacacttctatcat 328  Q
    ||||| ||||||  |||||||||||||||||||||||  |||||||| |||||||||||  |||||| |||||||||| |||||||||||||||||||||    
T  43290961 ggtacataatacggcaaattttaaaaaatgaaggtacgggtacgttggtataaaacatcaaaaaaaatatttttcaagcgaattactacacttctatcat 43291060  T
Q  329 catgttgcttcagcgatttacttattgtgtgcatcc 364  Q
    |||||||||| || | ||||||| || |||||||||    
T  43291061 catgttgcttgagagttttactttttttgtgcatcc 43291096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 448
Target Start/End: Original strand, 43291119 - 43291171
Alignment:
Q  397 caagagatagaattaaaatacagtaaaa-agcaaaataattttggttattttt 448  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||    
T  43291119 caagagagagaattaaaatacaataaaaaagcaaaataattttggtaattttt 43291171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 317
Target Start/End: Original strand, 20061091 - 20061184
Alignment:
Q  225 tacgggtacgtaatacaacaaattttaaaa--aatgaaggtacaagtacgttgatataaaacatcggaaaaaagatttttcaagtgaattactac 317  Q
    |||||||||||||||| |||| ||||||||  |||||| ||||  ||||||||||||||| ||||  || ||| |||| |||||||| |||||||    
T  20061091 tacgggtacgtaatacgacaacttttaaaaagaatgaatgtacgggtacgttgatataaaccatc-aaataaatatttctcaagtgacttactac 20061184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 379
Target Start/End: Original strand, 32249190 - 32249352
Alignment:
Q  217 ggtaccggtacgggtacgtaatacaacaaattttaaaaaatgaaggtacaagtacgttgatataaaacatcggaaaaaagatttttcaagtgaattacta 316  Q
    ||||||||||  ||||||||||||  |||||||| |||||| |||||||  |||||||  |||||||||||  ||||| ||||||||||||||| |||||    
T  32249190 ggtaccggtatcggtacgtaatacggcaaatttttaaaaatcaaggtacgggtacgttagtataaaacatcaaaaaaacgatttttcaagtgaagtacta 32249289  T
Q  317 cacttctatcatcatgttgcttcagcgatttacttattgtgtgcatccttctactattttcat 379  Q
    |||||||| ||||||| ||||| || | |||| || |||||||||||| ||||||||||||||    
T  32249290 cacttctaccatcatgatgcttgagagttttattttttgtgtgcatccctctactattttcat 32249352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 7860342 - 7860261
Alignment:
Q  235 taatacaacaaattttaaaaaatgaaggtacaagtacgttgatataaaacatcggaaaaaagatttttcaagtgaattactac 317  Q
    |||||| | ||||||||||||||||| ||||  |||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  7860342 taatacgataaattttaaaaaatgaaagtacgggtacgttgatataaaacatcag-taaaagatttttcaagtgaattactac 7860261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 32236688 - 32236768
Alignment:
Q  300 tttcaagtgaattactacacttctatcatcatgttgcttcagcgatttacttattgtgtgcat-ccttctactattttcat 379  Q
    ||||||||||| ||||||||||||||||||||| ||||| || | |||| || |||||||||| || ||||||||||||||    
T  32236688 tttcaagtgaagtactacacttctatcatcatgatgcttgagagttttattttttgtgtgcatcccctctactattttcat 32236768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 333
Target Start/End: Original strand, 19947546 - 19947578
Alignment:
Q  301 ttcaagtgaattactacacttctatcatcatgt 333  Q
    ||||||||||| |||||||||||||||||||||    
T  19947546 ttcaagtgaatcactacacttctatcatcatgt 19947578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 243 - 379
Target Start/End: Original strand, 33841230 - 33841368
Alignment:
Q  243 caaattttaaaaaatgaaggtacaagtacgttgatataaaacatcggaaaa-aagatttttcaagtgaattactacacttctatcatcatgttgcttcag 341  Q
    ||||||| |||| ||||||||||   ||||||| |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33841230 caaatttaaaaagatgaaggtacggatacgttggtataaaacatcataaaaaaagatttttcaagtgaattactacacttctatcatcatgttgcttgag 33841329  T
Q  342 cgatttacttattgtgtgcat-ccttctactattttcat 379  Q
     | ||||||| |||||||||| || ||||||||||||||    
T  33841330 agttttactttttgtgtgcatcccctctactattttcat 33841368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 454
Target Start/End: Original strand, 33841375 - 33841433
Alignment:
Q  397 caagagatagaattaaaatacagtaaaaa-gcaaaataattttggttatttttccaccg 454  Q
    ||||||| |||||||||||||| |||||| | ||||||||||||||||||||| |||||    
T  33841375 caagagagagaattaaaatacaataaaaaagaaaaataattttggttattttttcaccg 33841433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 454
Target Start/End: Original strand, 23442360 - 23442393
Alignment:
Q  421 aaaaagcaaaataattttggttatttttccaccg 454  Q
    ||||||||||||||||||||||||||||||||||    
T  23442360 aaaaagcaaaataattttggttatttttccaccg 23442393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 37161865 - 37161812
Alignment:
Q  397 caagagatagaattaaaatacagtaaaaa-gcaaaataattttggttatttttc 449  Q
    |||||||  ||||||||||||| |||||| ||||||||||||||||||||||||    
T  37161865 caagagagggaattaaaatacaataaaaaagcaaaataattttggttatttttc 37161812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 229 - 379
Target Start/End: Complemental strand, 18834947 - 18834797
Alignment:
Q  229 ggtacgtaatacaacaaattttaaaaaatgaaggtacaagtacgttgatataaaacatcggaaaaaagatttttcaagtgaattactacacttctatcat 328  Q
    ||||||||||||  ||||||||||||  | || ||||  ||||||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||    
T  18834947 ggtacgtaatacggcaaattttaaaatgttaatgtacgggtacgttgatataaaacatca-aaaaaagttttttccagtgaattactacacttctatcat 18834849  T
Q  329 catgttgcttcagcgatttacttattgtgtgcatc-cttctactattttcat 379  Q
    |||||||||| || | ||||||| || |||||||| | ||||||||||||||    
T  18834848 catgttgcttgagagttttactttttttgtgcatcacctctactattttcat 18834797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 223 - 379
Target Start/End: Complemental strand, 1759504 - 1759340
Alignment:
Q  223 ggtacgggtacgtaatacaacaaattttaaaaaa--tgaaggtacaagtacgttgatataaaacatcggaaaaaa-----gatttttcaagtgaattact 315  Q
    ||||| ||||||||||||  ||||||||||||||  |||||||||  |||||||| ||||||||||   ||||||     | ||||||||||||||||||    
T  1759504 ggtaccggtacgtaatacggcaaattttaaaaaaaatgaaggtacgggtacgttggtataaaacataaaaaaaaaagaaggttttttcaagtgaattact 1759405  T
Q  316 acacttctatcatcatgttgcttcagcgatttacttattgtgtgcatcct-tctactattttcat 379  Q
    ||||||||||||||||||| ||| || | |||| || || |||||||||| ||||||||||||||    
T  1759404 acacttctatcatcatgttacttgagagttttattttttttgtgcatcctctctactattttcat 1759340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 229 - 312
Target Start/End: Original strand, 8489639 - 8489721
Alignment:
Q  229 ggtacgtaatacaacaaattttaaaaaatgaaggtacaagtacgttgatataaaacatcggaaaaaagatttttcaagtgaatt 312  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||   |||||||||||||||||||||||    
T  8489639 ggtacgtaatacaacaaatttttaaaaatgaaggtacgggtacgttgatataaaacat-aaaaaaaagatttttcaagtgaatt 8489721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 11158511 - 11158474
Alignment:
Q  301 ttcaagtgaattactacacttctatcatcatgttgctt 338  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11158511 ttcaagtgaattactacacttctatcatcatgttgctt 11158474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 11158421 - 11158368
Alignment:
Q  405 agaattaaaatacagtaaaaa-gcaaaataattttggttatttttccaccgtcc 457  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||| |||||||    
T  11158421 agaattaaaatacaataaaaaagcaaaataattttggctatttttcaaccgtcc 11158368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 705681 - 705714
Alignment:
Q  316 acacttctatcatcatgttgcttcagcgatttac 349  Q
    |||||||||||||||||||||||||| |||||||    
T  705681 acacttctatcatcatgttgcttcagagatttac 705714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 453
Target Start/End: Original strand, 8489906 - 8489955
Alignment:
Q  405 agaattaaaatacagtaaaaag-caaaataattttggttatttttccacc 453  Q
    |||||| ||||||| ||||||  |||||||||||||||||||||||||||    
T  8489906 agaattgaaatacaataaaaaaacaaaataattttggttatttttccacc 8489955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 18834782 - 18834733
Alignment:
Q  405 agaattaaaatacagtaaaaagcaaaataattttggttatttttccaccg 454  Q
    |||||||||||||| | ||||| |||||||||||||||| |||| |||||    
T  18834782 agaattaaaatacaatgaaaagtaaaataattttggttaatttttcaccg 18834733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 317
Target Start/End: Complemental strand, 34106436 - 34106348
Alignment:
Q  229 ggtacgtaatacaacaaattttaaaaaatgaaggtacaagtacgttgatataaaacatcggaaaaaagatttttcaagtgaattactac 317  Q
    |||||| |||||| ||||||||||||||| ||||| || ||||||||| |||||||||   |||||| ||||| |||||||||||||||    
T  34106436 ggtacgaaatacatcaaattttaaaaaattaaggtgcaggtacgttgacataaaacattttaaaaaatattttccaagtgaattactac 34106348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 453
Target Start/End: Complemental strand, 445493 - 445436
Alignment:
Q  397 caagagatagaattaaaatacagtaaaaag-caaaataattttggttatttttccacc 453  Q
    ||||||| |||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  445493 caagagagagaattgaaatacaataaaaaggcaaaataattttggttatttttccacc 445436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 17110 - 17018
Alignment:
Q  244 aaattttaaaaaatgaaggtacaagtacgttgatataaaacatcggaaaaaa-gatttttcaagt-gaattactacacttctatcatcatgtt 334  Q
    |||||||||||||| |||||||  ||| |||| || ||||||||  |||||| ||||||| |||| |||||||||||||||||||||||||||    
T  17110 aaattttaaaaaattaaggtaccggtaggttggtacaaaacatcataaaaaaagattttttaagttgaattactacacttctatcatcatgtt 17018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 7505 - 7605
Alignment:
Q  217 ggtaccggtacgggtacgtaatacaacaaattttaaaaaatgaaggtacaagtacgttgat-ataaaacatcggaaaaaagatttttcaagtgaattact 315  Q
    ||||| ||||| |||||||||||| |||||||||||||||  |||||||  |||| ||||| ||||||| ||   ||||||||||| |||| || |||||    
T  7505 ggtacgggtaccggtacgtaatacgacaaattttaaaaaacaaaggtacgggtacattgataataaaacgtcaagaaaaagattttccaagagagttact 7604  T
Q  316 a 316  Q
    |    
T  7605 a 7605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University