View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16698_high_18 (Length: 255)
Name: NF16698_high_18
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 37927542 - 37927307
Alignment:
| Q |
1 |
ttagatctatcaattcatggaatttaaaccttggttttttgaaacttttcccttggaggaaaggttttaaccctagcatatgctaaaacaaacctctgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37927542 |
ttagatctatcaattcatggaatttaaaccttggttttttgaaacttttcacttggaggaaaggttttaaccctagcatatgctaaaacaaacctctgca |
37927443 |
T |
|
| Q |
101 |
caagtttggattcaaatttatgggttatcacaggaatattgatgtctaaagatgcttgcaattacaagtagtataggagcactttgtgcactgatgtagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37927442 |
caagtttggattcaaatttatgggttatcacaggaatattgatgtctaaagatgcttgcaattacaagtagtataggagcactttgtgcactgatgtagc |
37927343 |
T |
|
| Q |
201 |
tgccaacaagcttaattttgatcctccttttggcca |
236 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37927342 |
tgccaacaagcttaattttgatcgtccttttggcca |
37927307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University