View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16698_high_19 (Length: 252)

Name: NF16698_high_19
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16698_high_19
NF16698_high_19
[»] chr2 (3 HSPs)
chr2 (16-235)||(1747352-1747591)
chr2 (106-143)||(31899459-31899496)
chr2 (103-149)||(40357336-40357382)
[»] chr1 (2 HSPs)
chr1 (102-139)||(17688211-17688248)
chr1 (109-149)||(51246729-51246769)
[»] chr4 (2 HSPs)
chr4 (109-149)||(43031554-43031594)
chr4 (104-152)||(38365899-38365947)
[»] chr6 (1 HSPs)
chr6 (106-139)||(26574566-26574599)
[»] chr5 (1 HSPs)
chr5 (16-93)||(7912954-7913031)
[»] chr7 (1 HSPs)
chr7 (109-149)||(36747171-36747211)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 1747352 - 1747591
Alignment:
Q  16 atgccaacatggtggagctcgactccaggtttagtaaaatggacctaaaagagcaaaaataaaatgatccactagacaaaatattatt------------ 103  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||                
T  1747352 atgccaacatggtggagctcgactccaggtttagtaaaatagacctaaaagagcaaaaataaaatgatccactagataaaatattattgttttttaaata 1747451  T
Q  104 -taagactttgtttgagagtttggaggtgaggggaggagagtgttttagagggtggagaatataggggatgagacgg-------tgagagattaggttga 195  Q
     ||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||    
T  1747452 ctaagactttgtttgagagtttggagatgaggggatgagagtgtttcagagggtggagaatataggggatgagacggtgagacttgagagattaggttga 1747551  T
Q  196 aggcggtgagagaaatcccttgatactcagagttgataat 235  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1747552 aggcggtgagagaaatcccttgatactcagagttgataat 1747591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 31899496 - 31899459
Alignment:
Q  106 agactttgtttgagagtttggaggtgaggggaggagag 143  Q
    |||||||||||||||||||||||| |||||||||||||    
T  31899496 agactttgtttgagagtttggaggggaggggaggagag 31899459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 40357336 - 40357382
Alignment:
Q  103 ttaagactttgtttgagagtttggaggtgaggggaggagagtgtttt 149  Q
    ||||| |||||||||| |||||||| | |||||||||||||||||||    
T  40357336 ttaaggctttgtttgatagtttggatgggaggggaggagagtgtttt 40357382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 17688211 - 17688248
Alignment:
Q  102 tttaagactttgtttgagagtttggaggtgaggggagg 139  Q
    |||||||||||||||||||||||||||| |||||||||    
T  17688211 tttaagactttgtttgagagtttggaggggaggggagg 17688248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 51246769 - 51246729
Alignment:
Q  109 ctttgtttgagagtttggaggtgaggggaggagagtgtttt 149  Q
    ||||||||| ||||||||||| ||||||||||||| |||||    
T  51246769 ctttgtttgggagtttggaggggaggggaggagagggtttt 51246729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 43031554 - 43031594
Alignment:
Q  109 ctttgtttgagagtttggaggtgaggggaggagagtgtttt 149  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  43031554 ctttgtttgagagtttggaggggaggggaggggagtgtttt 43031594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 38365899 - 38365947
Alignment:
Q  104 taagactttgtttgagagtttggaggtgaggggaggagagtgttttaga 152  Q
    |||| ||||||||| ||||||||||| ||||||||| ||| ||||||||    
T  38365899 taaggctttgtttgggagtttggaggggaggggaggggagagttttaga 38365947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 26574599 - 26574566
Alignment:
Q  106 agactttgtttgagagtttggaggtgaggggagg 139  Q
    |||||||||||||||||||||||| |||||||||    
T  26574599 agactttgtttgagagtttggaggggaggggagg 26574566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 7912954 - 7913031
Alignment:
Q  16 atgccaacatggtggagctcgactccaggtttagtaaaatggacctaaaagagcaaaaataaaatgatccactagaca 93  Q
    |||||||||||||||||||||| |  || ||||| ||||||  |||||||||||| ||| | || |||| ||||||||    
T  7912954 atgccaacatggtggagctcgattatagatttagcaaaatgagcctaaaagagcagaaaaagaaggatcaactagaca 7913031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 36747171 - 36747211
Alignment:
Q  109 ctttgtttgagagtttggaggtgaggggaggagagtgtttt 149  Q
    ||||||||||||||||||||| ||||||||| ||| |||||    
T  36747171 ctttgtttgagagtttggaggggaggggaggggagggtttt 36747211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University