View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_high_20 (Length: 249)
Name: NF16698_high_20
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 42965575 - 42965363
Alignment:
| Q |
12 |
ttactgacaaattaaaatcacatattaactaagtatattatattatttgaatgaaaaaaggtacgaatag--gtagttgggtgtcctaatactaatagct |
109 |
Q |
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| T |
42965575 |
ttactgacaaattaaaatcacatattaacta--tat-ttatattatttgaatgaaaaaaggtacgaatagaggtagttgggtgtcctaata------gct |
42965485 |
T |
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| Q |
110 |
aatgacccatatttctcataataatgatacattattatattaccttaatttgcctaaggatcatactaggatgtagacatatcttaggtatttatatatg |
209 |
Q |
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| T |
42965484 |
aatgacccatatttctcataataatgatacattattatattaccttaatttgcctaaggatcatactacgatgtagacatattttaggtatttatatatg |
42965385 |
T |
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| Q |
210 |
ttgtgcacacacaaaacaagac |
231 |
Q |
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| T |
42965384 |
ttgtgcacacacaaaacaagac |
42965363 |
T |
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