View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_high_26 (Length: 228)
Name: NF16698_high_26
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_high_26 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 6554014 - 6554205
Alignment:
| Q |
16 |
aatatcaagttgatactaagaatcttcaattttattaccaatcaacaaaattcatctctacaaaatccaaaaaatatggcaatgatagtttatatcaatc |
115 |
Q |
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| T |
6554014 |
aatatcaagttgatactaagaatcttcaattttattaccaatcaacaaaattcatctctacaaaatccaaaaaatatggcaatgatagtttatatcaatc |
6554113 |
T |
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| Q |
116 |
tatttgacgcctctctctcttagactttgctctctccatcttcaacatttctagcaagaaatcactccatgtatctataggccctggcaaac |
207 |
Q |
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| T |
6554114 |
tatttgacgcctctctctcttagactttgctctctccatcttcaacatttctagcaagaaatcactccatgtatctataggccctggcaaac |
6554205 |
T |
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Target: scaffold0929 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 2233 - 2289
Alignment:
| Q |
149 |
ctccatcttcaacatttctagcaagaaatcactccatgtatctataggccctggcaa |
205 |
Q |
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| T |
2233 |
ctccatcttcaacatatctaacaagaaatcactccatgtgtcaataggtccaggcaa |
2289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 6364174 - 6364230
Alignment:
| Q |
149 |
ctccatcttcaacatttctagcaagaaatcactccatgtatctataggccctggcaa |
205 |
Q |
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| T |
6364174 |
ctccatcttcaacatatctaacaagaaatcactccatgtgtcaataggtccaggcaa |
6364230 |
T |
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