View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_high_3 (Length: 557)
Name: NF16698_high_3
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 54395337 - 54395875
Alignment:
| Q |
1 |
ataccatctcccataggcacatctccaccagcaccaccttgatacatcttagcaataataggattacaaattccttccaactccttctgcttatcctcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54395337 |
ataccatctcccataggcacatctccaccagcaccaccttgatacatcttagcaataataggattacaaattccttccaactccttctgcttatcctcaa |
54395436 |
T |
|
| Q |
101 |
actcatccacttccgccatttgattcccctccaaccactgtatagcatcttccacagccttctcaatcttctccttatcatcatgactcaacttcccacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54395437 |
actcatccacttccgccatttgattcccctccaaccactgtattgcatcttccacagccttctcaatcttctccttatcttcatgactcaacttcccacc |
54395536 |
T |
|
| Q |
201 |
aatcttctcatcctttattgtattcctcatattataagcataattctcaagtgaattcttcgcctccactttcttcttcacctcttcgtcctctgcctta |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54395537 |
aatcttctcatccttaattgtattcctcatattataagcataattctcaattgaattcttcgcctccactttcttcttcacctcttcatcctctgcctta |
54395636 |
T |
|
| Q |
301 |
tacttctctgcatctttcaccatcttctctatctcttccttgctcaacctccccttatcattcgtgatcgttatcttgttcttcactccagctgttttat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54395637 |
tacttctctgcatctttcaccatcttctctatctcttccttgctcaacctccccttatcattcgtgatcgttatcttgttcttcactccagctgttttat |
54395736 |
T |
|
| Q |
401 |
cttcagcagaaacgttcaatataccattcgcatcaatgtcgaaacatacattgatctgtggtacaccccttggagcaggaggaataccagtgagttcaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54395737 |
cttcagcagaaacgttcaatataccattcgcatcaatgtcgaaacaaacattgatctgtggtacacctcttggagcaggaggaataccagtgagttcaaa |
54395836 |
T |
|
| Q |
501 |
tttcccaagaagattattatcctttgttcttgcacgttc |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54395837 |
tttcccaagaagattattatcctttgttcttgcacgttc |
54395875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 488
Target Start/End: Complemental strand, 23588965 - 23588500
Alignment:
| Q |
20 |
catctccaccagcaccaccttgatacatcttagcaataataggattacaaattccttccaactccttctgcttatcctcaaactcatccacttccgccat |
119 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||| ||||| || ||||| || |||| ||||||| ||| |||||||| ||||| | || | | |
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| T |
23588965 |
catctccaccagcacc---ttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaag |
23588869 |
T |
|
| Q |
120 |
ttgattcccctccaaccactgtatagcatcttccacagccttctcaatcttctccttatcatcatgactcaacttcccaccaatcttctcatcctttatt |
219 |
Q |
| |
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|||||| || |||||||| || ||||| | || | ||| | ||||| |||| |||||||||| | ||||||| | ||||||| || || || ||| |
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| T |
23588868 |
ttgatttccatccaaccattgaatagccccctcaatagcatcttcaattttcttcttatcatcagcagacaacttcgaagcaatcttgtcgtctttgatt |
23588769 |
T |
|
| Q |
220 |
gtattcctcatattataagcataattctcaagtgaattcttcgcctccactttcttcttcacctcttcgtcctctgccttatacttctctgcatctttca |
319 |
Q |
| |
|
|| |||||||| || || ||||| |||||||||| |||||| |||||||||||||| || ||| |||||||| | ||| ||||| || || || | || |
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| T |
23588768 |
gtgttcctcatgttgtaggcatagttctcaagtgcattcttggcctccactttctttttgtgctcctcgtcctcagacttgtacttttcagcttcctgca |
23588669 |
T |
|
| Q |
320 |
ccatcttctctatctcttccttgctcaacctccccttatcattcgtgatcgttatcttgttcttcactccagctgttttatcttcagcagaaacgttcaa |
419 |
Q |
| |
|
|||||||||| || ||||||||| | ||| ||||| ||||| ||||| || |||||||| ||| || | ||| || || || || || || ||||| |
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| T |
23588668 |
ccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaatcttgtttttctgccctgttgtcttgtcctctgctgagacattcaa |
23588569 |
T |
|
| Q |
420 |
tataccattcgcatcaatgtcgaaacatacattgatctgtggtacaccccttggagcaggaggaatacc |
488 |
Q |
| |
|
|| ||||| ||||||||||| || || ||| ||||||| || |||||||||||||||||||| ||||| |
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|
| T |
23588568 |
aatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggagggatacc |
23588500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 23597425 - 23597352
Alignment:
| Q |
415 |
ttcaatataccattcgcatcaatgtcgaaacatacattgatctgtggtacaccccttggagcaggaggaatacc |
488 |
Q |
| |
|
||||| || ||||| ||||| ||||| || || ||| ||||||| || |||||||||||||||||||||||||| |
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| T |
23597425 |
ttcaaaatgccattggcatcgatgtcaaagcagacagtgatctgaggaacaccccttggagcaggaggaatacc |
23597352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 304 - 467
Target Start/End: Original strand, 8101884 - 8102047
Alignment:
| Q |
304 |
ttctctgcatctttcaccatcttctctatctcttccttgctcaacctccccttatcattcgtgatcgttatcttgttcttcactccagctgttttatctt |
403 |
Q |
| |
|
|||||||| |||| ||||||||||| || |||||||| |||||| |||||||| || ||||| || |||||||||||| || | |||||| || | |
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| T |
8101884 |
ttctctgcttcttggaccatcttctcgatttcttcctttgacaaccttcccttatcgttggtgatggtaatcttgttcttctgcccggttgttttgtcct |
8101983 |
T |
|
| Q |
404 |
cagcagaaacgttcaatataccattcgcatcaatgtcgaaacatacattgatctgtggtacacc |
467 |
Q |
| |
|
||||||| || ||||| |||||||| |||||||| || ||||| ||| ||||||| || ||||| |
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| T |
8101984 |
cagcagagacattcaagataccattggcatcaatatcaaaacaaacagtgatctgaggaacacc |
8102047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 485
Target Start/End: Original strand, 39984767 - 39985044
Alignment:
| Q |
208 |
tcatcctttattgtattcctcatattataagcataattctcaagtgaattcttcgcctccactttcttcttcacctcttcgtcctctgccttatacttct |
307 |
Q |
| |
|
|||||||| || || |||||||| || || ||||| || || | || |||||| ||||| || |||||||| |||||| || || | ||| ||||||| |
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| T |
39984767 |
tcatccttaatggtgttcctcatgttgtatgcatagttttccaatgcattcttggcctcgaccttcttcttatgctcttcatcttccgacttgtacttct |
39984866 |
T |
|
| Q |
308 |
ctgcatctttcaccatcttctctatctcttccttgctcaacctccccttatcattcgtgatcgttatcttgttcttcactccagctgttttatcttcagc |
407 |
Q |
| |
|
|||| |||| ||||||||||| || |||||||| | || ||||| ||||| ||||| || || ||||||||| |||| |||||| ||||| || |
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|
| T |
39984867 |
ctgcctcttgaaccatcttctcaatgtcttcctttgaaagtctacccttgtcattggtgatggtgattttgttcttctggccagttgttttgtcttctgc |
39984966 |
T |
|
| Q |
408 |
agaaacgttcaatataccattcgcatcaatgtcgaaacatacattgatctgtggtacaccccttggagcaggaggaat |
485 |
Q |
| |
|
||| || ||||| |||||||| ||||||||||| || || ||| |||| || || ||||| || || ||||||||||| |
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|
| T |
39984967 |
agagacattcaagataccattggcatcaatgtcaaagcacacagtgatttggggaacacctctgggggcaggaggaat |
39985044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 443
Target Start/End: Complemental strand, 8018349 - 8018225
Alignment:
| Q |
319 |
accatcttctctatctcttccttgctcaacctccccttatcattcgtgatcgttatcttgttcttcactccagctgttttatcttcagcagaaacgttca |
418 |
Q |
| |
|
||||||||||| || |||||||| |||||| || || ||||| ||||| || |||||||||||| |||| |||||| || |||||||| || |||| |
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|
| T |
8018349 |
accatcttctcaatttcttccttagacaacctacctttgtcattggtgatggtaatcttgttcttctgcccagttgttttgtcctcagcagagacattca |
8018250 |
T |
|
| Q |
419 |
atataccattcgcatcaatgtcgaa |
443 |
Q |
| |
|
| |||||||| |||||||||||||| |
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|
| T |
8018249 |
agataccattggcatcaatgtcgaa |
8018225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 482
Target Start/End: Complemental strand, 17648789 - 17648701
Alignment:
| Q |
394 |
gttttatcttcagcagaaacgttcaatataccattcgcatcaatgtcgaaacatacattgatctgtggtacaccccttggagcaggagg |
482 |
Q |
| |
|
||||| ||||||||| | || | |||||||||||| ||||||||||| || |||||| |||||||||| ||||| || ||||||||||| |
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|
| T |
17648789 |
gttttgtcttcagcaaagacatccaatataccattagcatcaatgtcaaagcatacactgatctgtggaacacctctaggagcaggagg |
17648701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 482
Target Start/End: Complemental strand, 17706530 - 17706448
Alignment:
| Q |
400 |
tcttcagcagaaacgttcaatataccattcgcatcaatgtcgaaacatacattgatctgtggtacaccccttggagcaggagg |
482 |
Q |
| |
|
||||||||| | || |||||||||||||| | ||||||||| || |||||| |||||||||| ||||||| ||||||||||| |
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| T |
17706530 |
tcttcagcaaagacattcaatataccattaggatcaatgtcaaagcatacaatgatctgtggaacaccccaaggagcaggagg |
17706448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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