View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_high_4 (Length: 546)
Name: NF16698_high_4
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 157 - 529
Target Start/End: Original strand, 24751116 - 24751482
Alignment:
| Q |
157 |
gtttctacttaaatccaaatggttcattctataagccaacaaagtccttgggatccttcctgtcaagtttctatacttcaggttcaacgaggccaggacc |
256 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |
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| T |
24751116 |
gtttctacttaaatccaaatggctcattctagaagccaacaaagtccttgggatccttcccatcaagtttctatacttcaggttcaacaagaccaggacc |
24751215 |
T |
|
| Q |
257 |
aacatttatcctaacgtaaaaggacttagaccggataatcggttcaacgacaagtccaagt---ctgctagtccttaaatggggcctccaatggcgttgt |
353 |
Q |
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| T |
24751216 |
gacgtgtatcctagtgtaaaaggaattagaccgcgtaatcgattcaacaacaagtccaagtctgctgctagcccttaaatggggcctccaatggtgttgt |
24751315 |
T |
|
| Q |
354 |
tgcggagatgaagttgcattaagttgaagaggtttacaagtgtagttggaatccttcccgagatatgattaagcactgtaagctaggtaaggcgcccgat |
453 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| || |
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| T |
24751316 |
tgcggagatcaagttgcattaagttgaagaggtttacaagtgtagttggaatccttcacgagatatgat---------taagctaagtaaggcgcccaat |
24751406 |
T |
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| Q |
454 |
atcatatggaatctttgaggaaataacgtttttggagagatctatgatttggagaaaattaagggatgcgagacat |
529 |
Q |
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| T |
24751407 |
atcatatggaatctttgaggaaataaggtttttggagagatcgatgatttggagaaaattaaggtatgcgagacat |
24751482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 24750920 - 24751082
Alignment:
| Q |
1 |
ggctgtagatggcttaaggaagaagcaactgaaattctcccaaagagacggctatgtgtaaagtccat--atgaaaattgtacaaagctaatgccataga |
98 |
Q |
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| T |
24750920 |
ggctgtagatggcgtaaggaagaagcaaccgaaattctcccaaagagacggttgtgagtaaagtccatgtatgaaaaatgtacaaagctaatgccataga |
24751019 |
T |
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| Q |
99 |
cttatgaattaaaccattcaaatagttctgcggcagatcaaggttaatgaaatatgaagtttc |
161 |
Q |
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|||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
24751020 |
cttaggaattaaaccgttcaaattgttccgcggcagatcaaggttaatgaaatatgaagtttc |
24751082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 157 - 333
Target Start/End: Complemental strand, 51501428 - 51501252
Alignment:
| Q |
157 |
gtttctacttaaatccaaatggttcattctataagccaacaaagtccttgggatccttcctgtcaagtttctatacttcaggttcaacgaggccaggacc |
256 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||| |||| |
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| T |
51501428 |
gtttctacttaaatccaaatgactcattctagaagccaacaaagtccttgggatcctcccagtcaatttgttatacttcaggttcaacgagtccaagacc |
51501329 |
T |
|
| Q |
257 |
aacatttatcctaacgtaaaaggacttagaccggataatcggttcaacgacaagtccaagtctgctagtccttaaat |
333 |
Q |
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| T |
51501328 |
ggcatttgtcctagcgaaaaaggaattggaccagataatcggttcaacgataagtccaagtctgctagcccataaat |
51501252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 158 - 323
Target Start/End: Original strand, 24766166 - 24766331
Alignment:
| Q |
158 |
tttctacttaaatccaaatggttcattctataagccaacaaagtccttgggatccttcctgtcaagtttctatacttcaggttcaacgaggccaggacca |
257 |
Q |
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|||||||||||||| |||||| |||||||| ||||||||||||| |||||||||||||||||||| || ||||||||||||||| |||| ||| ||| |
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| T |
24766166 |
tttctacttaaatctaaatggctcattctagaagccaacaaagtacttgggatccttcctgtcaatttgttatacttcaggttcagcgagtccatgactg |
24766265 |
T |
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| Q |
258 |
acatttatcctaacgtaaaaggacttagaccggataatcggttcaacgacaagtccaagtctgcta |
323 |
Q |
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| T |
24766266 |
acatttgtcctagcgaaaaaggaattggaccggataattggttcaaggacaagtccaagtctgcta |
24766331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 331 - 513
Target Start/End: Complemental strand, 51501161 - 51500967
Alignment:
| Q |
331 |
aatggggcctccaatggcgttgttgcggagatgaagttgcattaagttgaagaggtttacaagtgtagttggaatccttcccgagatatga--------- |
421 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |
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| T |
51501161 |
aatggggcctccaatggcgttgttacggagatcaagttgcattaagttgaagaggtttacaagcgttgttggaatccttcctgagatatgattgtctgca |
51501062 |
T |
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| Q |
422 |
---ttaagcactgtaagctaggtaaggcgcccgatatcatatggaatctttgaggaaataacgtttttggagagatctatgatttggagaaaatt |
513 |
Q |
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| T |
51501061 |
aggttgagcaccataagctgagtaagacgccctatatcatatggaatctttccggaaataagacttccggagagatctatgatttggagaaaatt |
51500967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 51501616 - 51501462
Alignment:
| Q |
7 |
agatggcttaaggaagaagcaactgaaattctcccaaagagacggctatgtgtaaagtccatatgaaaattgtacaaagctaatgccatagacttatgaa |
106 |
Q |
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||||||||||||||||||||||| | |||| ||||||||||| || | || ||||||||| ||| | ||||||||||||||||||| |||||| ||| |
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| T |
51501616 |
agatggcttaaggaagaagcaaccggaattttcccaaagagatggttgtgactaaagtccacatggccaatgtacaaagctaatgccatcgacttaggaa |
51501517 |
T |
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| Q |
107 |
ttaaaccattcaaatagttctgcggcagatcaaggttaatgaaatatgaagtttc |
161 |
Q |
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||||||| ||||||| |||| ||| || ||||||||||||||||||||||||||| |
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| T |
51501516 |
ttaaaccgttcaaattgttccgcgacaaatcaaggttaatgaaatatgaagtttc |
51501462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 335 - 512
Target Start/End: Original strand, 24766436 - 24766625
Alignment:
| Q |
335 |
gggcctccaatggcgttgttgcggagatgaagttgcattaagttgaagaggtttacaagtgtagttggaatccttcccgagatatga------------t |
422 |
Q |
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| T |
24766436 |
gggcctccaatagcattgttgtggagatcaagttgcattaagttgaagaggtttacaagcgttgttggaatccttccagagatatgattgtctgcaaggt |
24766535 |
T |
|
| Q |
423 |
taagcactgtaagctaggtaaggcgcccgatatcatatggaatctttgaggaaataacgtttttggagagatctatgatttggagaaaat |
512 |
Q |
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| T |
24766536 |
tgagcaccgtaagttgagtaagacgccctatatcatatggaatctttccggaaataacatttccagagagatctatgatttggagaaaat |
24766625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 24765971 - 24766131
Alignment:
| Q |
1 |
ggctgtagatggcttaaggaagaagcaactgaaattctcccaaagagacggctatgtgtaaagtccatatgaaaattgtacaaagctaatgccatagact |
100 |
Q |
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||||| |||||||||||||||||||||| | |||| ||||||||||| || | || ||||||||| ||| | |||||||||||| ||||||||| | |
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| T |
24765971 |
ggctgaagatggcttaaggaagaagcaatcggaattttcccaaagagatggttgtgactaaagtccacatggccaatgtacaaagctattgccatagaat |
24766070 |
T |
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| Q |
101 |
tatgaattaaaccattcaaatagttctgcggcagatcaaggttaatgaaatatgaagtttc |
161 |
Q |
| |
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|| |||||||||| ||||||| |||| ||| || ||||||||| ||||||||||||||||| |
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| T |
24766071 |
taggaattaaaccgttcaaattgttccgcgacaaatcaaggttgatgaaatatgaagtttc |
24766131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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