View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_high_5 (Length: 512)
Name: NF16698_high_5
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 10 - 512
Target Start/End: Original strand, 32874758 - 32875260
Alignment:
| Q |
10 |
aagaatataccaggcacacattttactcacaaaaatatcacatggaactaatgacaaaaataattagcatatagacaaaaagaacaacaaaaatcttaga |
109 |
Q |
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| T |
32874758 |
aagaatataccaggcacacattttactcacaaaaatatcacatggaactaatgacaaaaataattagcatatagacaaaaagaacaacaaaaatcttaga |
32874857 |
T |
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| Q |
110 |
gatatttattttttgttcctgttatattggatttgtaaggttatggtttatgctactgcattcaccttatctcttaaagcttggttataattcaaataaa |
209 |
Q |
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| T |
32874858 |
gatatttattttttgttcctgttatattggatttgtaaggttatggtttatgctactgcattcaccttatctcttaaagcttggttataattcaaataaa |
32874957 |
T |
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| Q |
210 |
gcaagagcggcaaagaaattaaacaatggctgcttctacttcaccaaacttctcaacatctttgcacagaaatataaagaaaacatactatcattctttg |
309 |
Q |
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| T |
32874958 |
gcaagagcggcaaagaaattaaacaatggctgcttctacttcaccaaacttctcaacatctttgcacagaaatataaagaaaacatactatcattctttg |
32875057 |
T |
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| Q |
310 |
ctaggaaatagtatatctttgcaaaccaaacttggtttcacatcttctgtgccgttcaataaatctgtaataagtgtgaaatgttatggaactgcaaagt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32875058 |
ctaggaaatagtatatctttgcaaaccaaacttggtttcgcatcttctgtgccgttcaataaatctgtaataagtgtgaaatgttatggaactgcaaagt |
32875157 |
T |
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| Q |
410 |
atgatgaggtagtggtggatgaagaattggacaagattaggagacttcagaatggttcggatgttagaggagttgcattggaaggtgagaaaggaagaac |
509 |
Q |
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| T |
32875158 |
atgatgaggtagtggtggatgaagaattggacaagattaggagacttcagaatggttcggatgttagaggagttgcattggaaggcgagaaaggaagaac |
32875257 |
T |
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| Q |
510 |
ggt |
512 |
Q |
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| T |
32875258 |
ggt |
32875260 |
T |
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