View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_high_6 (Length: 465)
Name: NF16698_high_6
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 2672773 - 2673220
Alignment:
| Q |
1 |
tcagttttggagttctcgtgctagaaatcataagtggaatgaagaatagaggatttcatcaatcagatgacctaaatctccttggacatgtaagcaaaaa |
100 |
Q |
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| T |
2672773 |
tcagttttggagttctcgtgctagaaatcataagtggaatgaagaatagaggatttcatcaatcagatgacctaaatctccttggacatgtaagcaaaaa |
2672872 |
T |
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| Q |
101 |
cccctagtttacttgaatgataattttctagcatgattttcgactag--tttaaagtgtaaaccaaatttacacatgcatctgatgaaaatctactattc |
198 |
Q |
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| T |
2672873 |
cgcctagtttacttgaatgataattttctagcatgattttcgactagagtttaaagtgtaaaccaaatttacacatgcatctaatgaaaatctactattc |
2672972 |
T |
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| Q |
199 |
agacatctcatcatattattctaatcaaatcttaatatcaatgatatgaagtagcaaaataaaatgttctaggtatgcccttaacattattttgtgctaa |
298 |
Q |
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| T |
2672973 |
agacatctcatcatattattctaatcaaatcttaatatcaatgatatgaagtagcaaaataaaatgttctaggtatgcccttaacattattttgtgctaa |
2673072 |
T |
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| Q |
299 |
tttaaattttgattatcctatgtgttgtgataggcatggaggctatggaatgaaggaaaagcaatggaactaatagattcatcatatgcagattcatatt |
398 |
Q |
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| T |
2673073 |
tttaaattttgattatcctatgtgttgtgataggcatggaggctatggaatgaaggaaaagcaatggaactaatagattcatcatatgcagattcatact |
2673172 |
T |
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| Q |
399 |
cagaatctgaagttataagatgcataaatgtaggcctaatatgtgtcc |
446 |
Q |
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| T |
2673173 |
cagaagctgaagttataagatgcataaatgtaggcctaatatgtgtcc |
2673220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 2681825 - 2681776
Alignment:
| Q |
6 |
tttggagttctcgtgctagaaatcataagtggaatgaagaatagaggatt |
55 |
Q |
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| T |
2681825 |
tttggagttcttgtgctagagatcataagtggaaagaaaaatagaggatt |
2681776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 2681571 - 2681515
Alignment:
| Q |
390 |
attcatattcagaatctgaagttataagatgcataaatgtaggcctaatatgtgtcc |
446 |
Q |
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|||||||| |||||||||||||| | ||||||||| |||| || ||| ||||||||| |
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| T |
2681571 |
attcatatacagaatctgaagttcttagatgcatacatgttggactattatgtgtcc |
2681515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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