View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16698_high_7 (Length: 409)
Name: NF16698_high_7
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 56975 - 57360
Alignment:
| Q |
17 |
atacataccaagaacaaaagcagctgctctagttccaccgtggttgttaggattagagggtctccctctccagtcaacagtagtattcatgatgccttca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56975 |
atacataccaagaacaaaagcagctgctctagttccaccgtggttgttaggattagagggtctccctctccagtcaacagtagtattcatgatgccttca |
57074 |
T |
|
| Q |
117 |
tctgcagattctccctttggaattggaatattaatattattaatacttcctccctcatccattcttgttgttgtcttgtcttactctcttgctaatgctg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57075 |
tctgcagattctccctttggaattggaatattaatattattaatacttcctccctcatccattcttgttgttgtcttgtcttactctcttgctaatgctg |
57174 |
T |
|
| Q |
217 |
aatttgagggaaattggtccgcaatttatagacagtgtctagcctaccaccacttgcaacttgcttgctttacaatattatttagagaaattaattatga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57175 |
aatttgagggaaattggtccgcaatttatagacagtgtctagcctaccaccacttgcaacttgcttgctttacaatattatttagagaaattaattatga |
57274 |
T |
|
| Q |
317 |
gactccacctacgccccccgcacttattctttacacgtgtacgcaccacattcccaccaagatgagaataagatcaattcatttca |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57275 |
gactccacctacgccccccgcacttattctttacacgtgtacgcaccacattcccaccaagatgagaataagatcaattcatttca |
57360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University