View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_high_9 (Length: 360)
Name: NF16698_high_9
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 15379718 - 15379386
Alignment:
| Q |
10 |
aatatatccacaaattgaagaaaagttaaagtacaatacaacacaaattcactattactagtacttcacaacattttgttgacaaaagttaattcttccc |
109 |
Q |
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| T |
15379718 |
aatatattcacaaattgaagaaaagttaaagtacaatacaacacaaattcactattactagtacttcacaacattttgttgacacaaattaattcttccc |
15379619 |
T |
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| Q |
110 |
aaccatctcaactactcgtgattgacatttcatatctttatatagctacaggaatcaaaagtatgcacttgggtctaccttggattttagataagataat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15379618 |
aaccatctcaactactcgtgattgacatttcatatctttatatcgctacaggaatcaaaagtatgcatttgggtctaccttggattttagataagataat |
15379519 |
T |
|
| Q |
210 |
ttgtgtagctcgtgaaatgagaaacccagtaaaagttgaagttgaatctaacttgcacgcaaagaaactgaggaagctaaatggggttactgatcttagc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15379518 |
ttgtgtagctcgtgaaatgagaaacccagtaaaagttgaagttgaatctaacttgcacgcaaagaaactgaggaagctaaatggggtaactgatcttagc |
15379419 |
T |
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| Q |
310 |
ctccaatccaagacacttagaacaagtagctcc |
342 |
Q |
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| T |
15379418 |
ctccaatccaagacacttagaacaagtagctcc |
15379386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 342
Target Start/End: Original strand, 26436355 - 26436512
Alignment:
| Q |
185 |
taccttggattttagataagataatttgtgtagctcgtgaaatgagaaacccagtaaaagttgaagttgaatctaacttgcacgcaaagaaactgaggaa |
284 |
Q |
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|||||||||| ||||||||||| |||| |||||| |||||||| | || || |||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
26436355 |
taccttggatattagataagatgatttctgtagcacgtgaaattatgaagtgggtgaaagttccagttgaatctagcttgcacgcaaagaaactgaggaa |
26436454 |
T |
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| Q |
285 |
gctaaatggggttactgatcttagcctccaatccaagacacttagaacaagtagctcc |
342 |
Q |
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|||| |||||| | |||||| |||||||||||||| | | | |||||||| |||||| |
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| T |
26436455 |
actaagtggggtgattgatctcagcctccaatccaaaatagtcagaacaagcagctcc |
26436512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 7706694 - 7706745
Alignment:
| Q |
132 |
tgacatttcatatctttatatagctacaggaatcaaaagtatgcacttgggt |
183 |
Q |
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||||||||||||| ||||| ||||||||||||| ||||||||| | |||||| |
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| T |
7706694 |
tgacatttcatatatttatgtagctacaggaattaaaagtatgtatttgggt |
7706745 |
T |
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