View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_low_1 (Length: 1052)
Name: NF16698_low_1
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 691; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 85 - 874
Target Start/End: Complemental strand, 45667047 - 45666256
Alignment:
| Q |
85 |
cctggattttcttcaggtttattactaagtattcctgtgaatggtatctccttttccatgtataatgatgatccatgccgtgttttcttgcgataaacac |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45667047 |
cctggattttcttcaggtttattactaagtattcctgtgaatggtatctccttttccatgtataatgatgatccacgccgtgttttcttgcgataaacac |
45666948 |
T |
|
| Q |
185 |
atgatctgacattgttacaccatccacctccctgacagagtattttctctttagtatcactataacttttttacagcaaaaaagggaaagtagcttgacc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45666947 |
atgatctgacattgttacaccatccacctccctgacagagtattttctctttagtatcactataacttttttacagcaaaaaagggaaagtagcttgacc |
45666848 |
T |
|
| Q |
285 |
aacacatgatgacagttagaaatcctaaaactttaattatttctaaatattttcagttaattatatatgccatggcatatatgtatgttgcaaaaaatgg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
45666847 |
aacacatgatgacagttagaaatcctaaaactttaattatttctaaatattttcagttaattatatatgccatggcatatatgcatgttac-aaaaatgg |
45666749 |
T |
|
| Q |
385 |
gaatcagccaacaaattcacnnnnnnntgctattgaagt---acgaaaagaaaagaaagactcgtcaaccttaatactattatttggtgtagaaatacct |
481 |
Q |
| |
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||||||||||| |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45666748 |
gaatcagccaaaaaattcacaaaaaaatgctattaaagtacgacgaaaagaaaagaaagactcgtcaaccttaatactattatttggtgtagaaatacct |
45666649 |
T |
|
| Q |
482 |
ctaaattaacaagccaactgtctgctcctgatccatatccacggtgcaaatggtaaccaggtaatgttccatccaagcacactgcaagaaac-aaaaaat |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45666648 |
ctaaattaacaagccaactgtctgctcctgatccatatccacggtgcaaatggtaaccaggtaatgttccatccaagcacactgcaagaaacaaaaaaat |
45666549 |
T |
|
| Q |
581 |
atttaatgttagagaggaaaggaggagaaaggtgctgtattgtttgtaggtagtactagtactagtatagtacctgctcctttagcagctgcattgtgga |
680 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45666548 |
atttaatgtt-gagaggaaaggaggagaaaggtgctgtattgtttgtaggtagtactagtactagtatagtacctgctcctttagcagctgcattgtgaa |
45666450 |
T |
|
| Q |
681 |
taagggtgaatcctacgagaagaggatttccattaccctcctcaagaaaggatgttgcatgttcatgagcctctaacagaaagagttcttcggtttcatt |
780 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45666449 |
caagggtgagtcctacgagaagaggatttccattaccctcctcaagaaaggatgctgcatgttcatgagcctctaacagaaagagttcttcagtttcatt |
45666350 |
T |
|
| Q |
781 |
gaagaagtgatgttgttgaccataaaccaagttgatgataacaagtcctattgcaatgaaaagccagaaatgtttagccattggcgatgacaat |
874 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45666349 |
gaagaagtgatgttgttgaccataaaccaagttgatgataacaagtcctattgcaatgaaaagccagaaaagtttagccattggcgatgacaat |
45666256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 940 - 1034
Target Start/End: Complemental strand, 45666240 - 45666142
Alignment:
| Q |
940 |
ctatattaacgtgaacaaaggaaatttaggaggtgattaaggaaagaggtac-----aaagatatataaggcaaagnnnnnnngtggcaccgggcgggct |
1034 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
45666240 |
ctatattaatgtgaacaaaggaaatttaggaggtgattaagg-aagaggtacaaagtaaagatatataaggcaaagaaaaaaagtggcaccgggcgggct |
45666142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 476 - 576
Target Start/End: Original strand, 37973690 - 37973790
Alignment:
| Q |
476 |
atacctctaaattaacaagccaactgtctgctcctgatccatatccacggtgcaaatggtaaccaggtaatgttccatccaagcacactgcaagaaacaa |
575 |
Q |
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|||||||||||||||||||||| |||| ||| || ||||| ||||| | | ||||| ||| |||| ||||||||||||||||| ||||| | |||||| |
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| T |
37973690 |
atacctctaaattaacaagccagctgtttgcaccggatccgtatccgtgatcaaaatgataagcaggcaatgttccatccaagcagactgccaaaaacaa |
37973789 |
T |
|
| Q |
576 |
a |
576 |
Q |
| |
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| |
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|
| T |
37973790 |
a |
37973790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 38257829 - 38257767
Alignment:
| Q |
85 |
cctggattttcttcaggtttattactaagtattcctgtgaatggtatctccttttccatgtat |
147 |
Q |
| |
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||||| ||||||||||||||||| || | |||||||||||||||||| | |||||||||||| |
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| T |
38257829 |
cctgggttttcttcaggtttattgctcaatattcctgtgaatggtatttgattttccatgtat |
38257767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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