View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_low_12 (Length: 347)
Name: NF16698_low_12
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 34315915 - 34315585
Alignment:
| Q |
1 |
gactattaagactaatatctcgaaccaagtaagacacatgaggcacaaaactcttcctcaataccttttaatgttgttatgaatgtcaatttaaacacct |
100 |
Q |
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| T |
34315915 |
gactattaagactaatatctcgaaccaagtaagacacatgaggcacaaaactcttcctcaataccttttaatgttgttatgagtgtcaatttaaacacct |
34315816 |
T |
|
| Q |
101 |
tggttaattaagttaaaagagaccagtactatcatctcatcctagctagaattattggatactgcaaaattatcttaaatgaaaaagtaacaagattcnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34315815 |
tggttaattaagttaaaagagaccagtactatcatctcatcctagctagaattattggatactgcaaaattatcttaaatgaaaaagtaacaagattctt |
34315716 |
T |
|
| Q |
201 |
nnnnnnctttgnnnnnnnnnnggaattggaaattagaagccaacaaaaatgtggattggccaaatgcttgttttcttaaagttgaattctactgaactta |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34315715 |
ttttttctttgaaaaaaaaaaggaattggaaattagaagccaacaaaaatgtggattggccaaatgcttgttttcttaaagttgaattctactgaactta |
34315616 |
T |
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| Q |
301 |
ttggcatttgttgagattattaattcaatta |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34315615 |
ttggcatttgttgagattattaattcaatta |
34315585 |
T |
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