View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_low_15 (Length: 275)
Name: NF16698_low_15
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 35935459 - 35935706
Alignment:
| Q |
11 |
cacagaatgacaaaacccctnnnnnnnggacaaaagttattatcagcataaaacagtttgtgaggctatttttacctccattgagccacaatactaatgg |
110 |
Q |
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| T |
35935459 |
cacagaatgacaaaacccctaaaaaaaggacaaaagttattatcagcataaaacagtttgtgaggctatttttacctccattgagccacaatactaatgg |
35935558 |
T |
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| Q |
111 |
tttagttgaagagttatatggagactccacaaaataataaaaaagtgttcttccggcctcaggttcaacagtcacataaccagagtattggtcaaaatct |
210 |
Q |
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| T |
35935559 |
tttagttgaagagttatatggagactccacaaaataataaaaaagtgctcttccggcctcaggttcaacagtcacataaccagagtattggtcaaaatct |
35935658 |
T |
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| Q |
211 |
acaccatcgggttgaccaggcaatgtgacgatcttgtcagctagtctt |
258 |
Q |
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| T |
35935659 |
acaccatcgggttgaccaggcaatgtgacgatcttgtcagctagtctt |
35935706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 65 - 258
Target Start/End: Original strand, 35941063 - 35941256
Alignment:
| Q |
65 |
agtttgtgaggctatttttacctccattgagccacaatactaatggtttagttgaagagttatatggagactccacaaaataataaaaaagtgttcttcc |
164 |
Q |
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| T |
35941063 |
agtttatgagactatttttacctccattgagccataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttcc |
35941162 |
T |
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| Q |
165 |
ggcctcaggttcaacagtcacataaccagagtattggtcaaaatctacaccatcgggttgaccaggcaatgtgacgatcttgtcagctagtctt |
258 |
Q |
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| T |
35941163 |
agtctcaggatcaactgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtctt |
35941256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 80 - 258
Target Start/End: Original strand, 35915944 - 35916122
Alignment:
| Q |
80 |
ttttacctccattgagccacaatactaatggtttagttgaagagttatatggagactccacaaaataataaaaaagtgttcttccggcctcaggttcaac |
179 |
Q |
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||||||||||||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |||||| |||||||| ||||| |
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| T |
35915944 |
ttttacctccattgaaccacagtactaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagttctcttccagcctcaggatcaac |
35916043 |
T |
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| Q |
180 |
agtcacataaccagagtattggtcaaaatctacaccatcgggttgaccaggcaatgtgacgatcttgtcagctagtctt |
258 |
Q |
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| T |
35916044 |
tgtgacatagcctgaatattggtcaaaatttactccatagggttgaccaggcaatgtgacgatcttgtctgctagtctt |
35916122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 60 - 252
Target Start/End: Original strand, 35911537 - 35911729
Alignment:
| Q |
60 |
aaaacagtttgtgaggctatttttacctccattgagccacaatactaatggtttagttgaagagttatatggagactccacaaaataataaaaaagtgtt |
159 |
Q |
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| T |
35911537 |
aaaacagtttctaatgcaatttttacctccattgagccataatactaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagttct |
35911636 |
T |
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| Q |
160 |
cttccggcctcaggttcaacagtcacataaccagagtattggtcaaaatctacaccatcgggttgaccaggcaatgtgacgatcttgtcagct |
252 |
Q |
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| T |
35911637 |
ctaccagcctcaggatcaactgtgacatagcctgaatattggtcaaaatttaccccatagggttgaccaggcaatgtgtcaatcttgtcagct |
35911729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 35922212 - 35922391
Alignment:
| Q |
79 |
tttttacctccattgagccacaatactaatggtttagttgaagagttatatggagactccacaaaataataaaaaagtgttcttccggcctcaggttcaa |
178 |
Q |
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|||||||||||||| |||||||||| ||| |||||||| ||||||||| |||||| |||||||||||||| |||||| |||||| |||||||| |||| |
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| T |
35922212 |
tttttacctccattaagccacaatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttctcttccagcctcaggatcaa |
35922311 |
T |
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| Q |
179 |
cagtcacataaccagagtattggtcaaaatctacaccatcgggttgaccaggcaatgtgacgatcttgtcagctagtctt |
258 |
Q |
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| T |
35922312 |
ctgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtctt |
35922391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 50 - 252
Target Start/End: Original strand, 35928863 - 35929063
Alignment:
| Q |
50 |
ttatcagcataaaacagtttgtgaggctatttttacctccattgagccacaatactaatggtttagttgaagagttatatggagactccacaaaataata |
149 |
Q |
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|||||||||||||| |||||| |||| |||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
35928863 |
ttatcagcataaaaaagtttg--aggcaatttatacctccattgagccacaaaactaaaggtttagtggaagagttatatggagactccacaaaataata |
35928960 |
T |
|
| Q |
150 |
aaaaagtgttcttccggcctcaggttcaacagtcacataaccagagtattggtcaaaatctacaccatcgggttgaccaggcaatgtgacgatcttgtca |
249 |
Q |
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||||| |||||| |||||||| | |||||| ||||| || || ||||||||||||| || |||| |||||||||||||||||| | ||||||||| |
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| T |
35928961 |
gaaaagctctcttccagcctcaggattaacagtgacatagcctgaatattggtcaaaattcactccatatggttgaccaggcaatgtgtcaatcttgtca |
35929060 |
T |
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| Q |
250 |
gct |
252 |
Q |
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||| |
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| T |
35929061 |
gct |
35929063 |
T |
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