View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16698_low_18 (Length: 259)
Name: NF16698_low_18
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_low_18 |
 | |
|
| [»] scaffold0339 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0339 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 16240 - 15992
Alignment:
| Q |
11 |
caaaggggttcacagtgaatgcatttaagtgcatgtttgaattgacacgagtttcatagaaccgcggtgtcactgtgattccaaacatacacaatgaaac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16240 |
caaaggggttcacagtgaatgcatttaagtgcatgtttgaattgacacgagtttcatagaaccgtggtgtcactgtgattccaaacatacacaatgaaac |
16141 |
T |
|
| Q |
111 |
gagatataccttattcaaagctatattagctttttgcacccaatcagcatccttgcctttccctaatacagaaccagctgaagttagatcattttgttca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16140 |
gagatataccttattcaaagctatattagctttttgcacccaatcagcatccttgcctttccctaatacagaaccagctgaagttagatcattttgttca |
16041 |
T |
|
| Q |
211 |
attgcttgaccaacttcactcaatttgtacaccaagtcttgaagatacc |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16040 |
attgcttgaccaacttcactcaatttgtacaccaagtcttgaagatacc |
15992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 2866 - 2925
Alignment:
| Q |
11 |
caaaggggttcacagtgaatgcatttaagtgcatgtttgaattgacacgagtttcataga |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2866 |
caaaggggttcacagtgaatgcatttaagtgcatgtttgaattgacacgagtttcataga |
2925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 47273641 - 47273700
Alignment:
| Q |
11 |
caaaggggttcacagtgaatgcatttaagtgcatgtttgaattgacacgagtttcataga |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47273641 |
caaaggggttcacagtgaatgcatttaagtgcatgtttgaattgacacgagtttcataga |
47273700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 47296385 - 47296422
Alignment:
| Q |
92 |
caaacatacacaatgaaacgagatataccttattcaaa |
129 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47296385 |
caaacatacacaatgaaacaagatataccttattcaaa |
47296422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University