View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_low_2 (Length: 637)
Name: NF16698_low_2
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 16 - 629
Target Start/End: Original strand, 26309399 - 26310013
Alignment:
| Q |
16 |
aaaacatagtttgtgacctaacttttctttagttcccaacttgtaacagctatcacaccaacactttcctaaccttcttcatctgaggcaaccataacgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
26309399 |
aaaacatagtttgtgacctaacttttctttagttcccaacttgtaacagctagcacacaaacactttcctaaccttcatcatctgaggcaaccataacgt |
26309498 |
T |
|
| Q |
116 |
taatggaagaactaccattttttccttgtcaggaaaatccttcttgatgtgaccgatattttgacaaatgaagcatttgtattttgatttatcaaatcct |
215 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26309499 |
taatggaataactaccattttttccttgtctggaaaatccttcttgatgtgaccgatattatgacaaatgaagcatttgtattttgatttatcaaatcct |
26309598 |
T |
|
| Q |
216 |
ttggaattggatttaaaccaagatttcttacccttacaatt-cctctactaccatttcttcctcttgacaaatttaagaattaacaatcttcaaccttca |
314 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26309599 |
ttggaaatggatttaaaccaagatttcttacccttacaatttcctttactaccatttcttcctcttgacacatttaagaattaacaatcttcaaccttca |
26309698 |
T |
|
| Q |
315 |
agtcattaaatgtagttacctcattggttctctgattagacctcatctaaagtgatagtgccttcttttccataaagtatattatcattgaagtgctcga |
414 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26309699 |
agtcattaaatgtcgttacctcattggttctccgattagacctcatctaaagtgatagtgccttcttttccataaagtatattatcattgaagtgctcga |
26309798 |
T |
|
| Q |
415 |
agggtataggtaacagacacaataaaagtaaagacttatcctcttcctcaatattcaccaaatgatcaactatattttaaactccattagtttctccgca |
514 |
Q |
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| T |
26309799 |
atggtataggtaacagacacaataaaagtaaagacttatcctcttcctcaatattcaccaaatgatcaactatattttaaactccattggtttctctgca |
26309898 |
T |
|
| Q |
515 |
atatattgagtccaccatcctaaatgaataaagttattgtttcaagaattgagacaataaacttagtcatatacaatgaatccaacttggttcacattga |
614 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26309899 |
atatattgagtccaccatcctaaatgaatggagttattgtttcaagaattgagataataaacttagtcatatacagtgaatccaacttggttcacattga |
26309998 |
T |
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| Q |
615 |
cgtcatgttcatctc |
629 |
Q |
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|||||||||| |||| |
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| T |
26309999 |
cgtcatgttcttctc |
26310013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 32428816 - 32428957
Alignment:
| Q |
71 |
caccaacactttcctaaccttcttcatctgaggcaaccataacgttaatggaagaactaccattttttccttg-tcaggaaaatccttcttgatgtgacc |
169 |
Q |
| |
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|||||||||| || |||||||||| ||| ||||||||| ||| | || ||||||||||||||| | ||| ||| || ||||||| |||| | || | |
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| T |
32428816 |
caccaacactctcataaccttcttggtctcaggcaaccacaacttaaacggaagaactaccattgtgcactttctcaagacaatcctttttgaagcgaac |
32428915 |
T |
|
| Q |
170 |
gatattttgacaaatgaagcatttgtattttgatttatcaaa |
211 |
Q |
| |
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|| || ||||||||||||||||||||||||||| ||||||| |
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| T |
32428916 |
gaccttatgacaaatgaagcatttgtattttgatatatcaaa |
32428957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 565
Target Start/End: Original strand, 32429288 - 32429328
Alignment:
| Q |
525 |
tccaccatcctaaatgaataaagttattgtttcaagaattg |
565 |
Q |
| |
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||||||||||||||||| || |||| ||||||||||||||| |
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| T |
32429288 |
tccaccatcctaaatgagtagagttgttgtttcaagaattg |
32429328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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