View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_low_22 (Length: 246)
Name: NF16698_low_22
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7969551 - 7969783
Alignment:
| Q |
1 |
tggggatcacctttccagtttgggtcatcacgtagatttgcatctgcaccatcaattgtcaatggctcaacgcattaatcaatgataaaaacaacataaa |
100 |
Q |
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| T |
7969551 |
tggggatcacctttccagtttgggtcatcacgtagatttgcatctgcaccatcaattgtcaatggctcaacgcattaatcaatgataaaaacaacataaa |
7969650 |
T |
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| Q |
101 |
gaaaacaaaattgcaaaatttattacagcacaacagggacaaaagaagttcatgatcaaaatcaataagagaaattttgagacaaatatttcaagaactg |
200 |
Q |
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| T |
7969651 |
gaaaacaaaattgcaaaatttattacagcacaacagggacaaaagaagttcatgatcagaatcaataaaagaaattttgagacaaatatttcaagaactg |
7969750 |
T |
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| Q |
201 |
atac-aaaaatagagaacactagcaaccttttt |
232 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
7969751 |
atacaaaaaatagagaacactagcaaccttttt |
7969783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 213
Target Start/End: Complemental strand, 37577498 - 37577346
Alignment:
| Q |
68 |
caacgcattaatcaatgataaaaacaacataaagaaaacaaaa----ttgcaaaatttattacagcacaacagggacaaaagaagttcatgatcaaaatc |
163 |
Q |
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|||| |||||||| |||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
37577498 |
caacacattaatccatgacaaaagcaacagaaagaaaacaaaacccattgcaaaatttattacagcacaacaggg-taaaagaaattcatgatc-aaatc |
37577401 |
T |
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| Q |
164 |
aataagagaaatt-----ttgagacaaatatttcaagaactgatacaaaaataga |
213 |
Q |
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| T |
37577400 |
aataaaagaaaatttgagttgagactgatatttcaagaactaatccaaaaataga |
37577346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 17591686 - 17591615
Alignment:
| Q |
159 |
aaatcaataagagaaattttgagacaaatatttcaagaactgatacaaaaatagagaacactagcaaccttt |
230 |
Q |
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| T |
17591686 |
aaatcaataatagaaaatttgagattgatatttcaagaactgatccaaaaatagaaaacactaacagccttt |
17591615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 32651534 - 32651629
Alignment:
| Q |
68 |
caacgcattaatcaatgataaaaacaacataaagaaaacaaaa----ttgcaaaatttattacagcacaacagggacaaaagaagttcatgatcaaa |
160 |
Q |
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|||| ||| |||||||||| ||| ||||||||||||||||||| ||||||||||||| || | |||||||||| |||| || |||| ||||||| |
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| T |
32651534 |
caacacatcaatcaatgattaaagcaacataaagaaaacaaaaccccttgcaaaatttatgacggtacaacaggga-aaaataaattcaagatcaaa |
32651629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 32763248 - 32763205
Alignment:
| Q |
186 |
atatttcaagaactgatacaaaaatagagaacactagcaacctt |
229 |
Q |
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| T |
32763248 |
atatttcaagaactgatccaaaaatagaaaacactaacaacctt |
32763205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 28475146 - 28475076
Alignment:
| Q |
159 |
aaatcaataagagaaattttgagacaaatatttcaagaactgatacaaaaatagagaacactagcaacctt |
229 |
Q |
| |
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|||||| ||| ||||| |||||||| | |||||||||||| || |||||||||| ||||||| ||||||| |
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| T |
28475146 |
aaatcagtaaaagaaaatttgagactgacatttcaagaactaatccaaaaatagaaaacactaacaacctt |
28475076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 32768236 - 32768173
Alignment:
| Q |
115 |
aaaatttattacagcacaacagggacaaaagaagttcatgatcaaaatcaataagagaaattttga |
180 |
Q |
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| T |
32768236 |
aaaatttattacagcacaacatgg-caaaagaaattaatgatc-aaatcaataaaagaaaatttga |
32768173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 25477702 - 25477662
Alignment:
| Q |
68 |
caacgcattaatcaatgataaaaacaacataaagaaaacaa |
108 |
Q |
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| T |
25477702 |
caacacattaatcaatgataaaagcaacagaaagaaaacaa |
25477662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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