View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_low_24 (Length: 239)
Name: NF16698_low_24
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 199646 - 199426
Alignment:
| Q |
1 |
cttacgctccaccaccagttgtccaccaccatcatacaccacttcatgctcatcctgctccaccgccaccacagcctggtcatcccggtcctccaccgcc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
199646 |
cttacgctccaccaccagttgtccaccaccatcatacaccacttcatgctcatcctgctccaccgccaccacagcctggtcatcccggtcctccaccgcc |
199547 |
T |
|
| Q |
101 |
acgtcctccgtattattaagtaattttcttcctatttactatatattaattatgattatctactaccataagttgatccttccatatatgtattaatcat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
199546 |
acgtcctccgtattattaagtaattttcttcctatttactatatattaattatgattatctactaccataagttgatccttccatatatgtattaatcat |
199447 |
T |
|
| Q |
201 |
tatactacatgtacttataat |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
199446 |
tatactacatgtacttataat |
199426 |
T |
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