View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16698_low_3 (Length: 559)
Name: NF16698_low_3
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 237 - 541
Target Start/End: Complemental strand, 13147682 - 13147373
Alignment:
| Q |
237 |
tgttcatctaaccaatcatatgttgtcaaaggtagtgtctaagaactcattgaggtaaaaatttataatttcnnnnnnntgtttgatttgaaaatgcaaa |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
13147682 |
tgttcatctaaccaatcatatgttgtcaaaagtagtgtctaagaactcattaaggtaaaaatttataatttcaaaaaaatgtttcatttgaaaatgcaaa |
13147583 |
T |
|
| Q |
337 |
gcctagtgttaatcatgcgaagtcaacaattattgatgtaaatgcatcacattctttannnnnnncataagaattaatactaaacttttttacatcaaca |
436 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
13147582 |
gtctagtgttaatcatgcgaagtcaacaattattgatgtaaatgcatcacattctttatttttttcataagaattaatactaaacttttttacatcaata |
13147483 |
T |
|
| Q |
437 |
ccgttgactccacaagattaacactagactttccatcttcggttaaacc-----nnnnnnnnnaaattataaatattcacatcaacgagtactctgacgc |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13147482 |
ccgttgactccacaagattaacactagactttccatcttcggttaaaccttttttttttttttaaattataaatattcacatcaacgagtactctggcgc |
13147383 |
T |
|
| Q |
532 |
tatctttaac |
541 |
Q |
| |
|
||| |||||| |
|
|
| T |
13147382 |
tatatttaac |
13147373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 13147925 - 13147762
Alignment:
| Q |
1 |
caagatgaatcgagtgagatcggtatgtttttgagaagacaaaaagtaaacaaatttaataaatctcaacaagtcgaaattgagcataatatggaaatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13147925 |
caagatgaatcgagtgagatcggtatgtttttgagaagacaaaaggtaaataaatttaataaatctcaacaagtcgaaattgagcataatatggaaatcg |
13147826 |
T |
|
| Q |
101 |
aattattaagattccttttgcaattgtaatccggaaaatgttgatgaagaaatagcttttcaag |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13147825 |
aattattaagattccttttgcaattgtaatccggaaaatgttgatgaagaaatagctttccaag |
13147762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University