View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16698_low_9 (Length: 361)
Name: NF16698_low_9
Description: NF16698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16698_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 7831656 - 7831395
Alignment:
| Q |
12 |
atgaacataataggattaaaactcaaatatgcttcatcaacacctttaagttagtaaagtgtcaaacatatgaatatgcatgagaacttttgaatacatt |
111 |
Q |
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| T |
7831656 |
atgaacataatagggttaagactcaaatatgcttcatcaacacctttaagttagtaaagtgtcaaacatatgaatatgcatgagaacttttgaatacatt |
7831557 |
T |
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| Q |
112 |
gtagttttcctctttttgtttccatggttgttatattttcttgcatttgactttagttttcgttgttgcagataatatagcaaatttataggagaatttg |
211 |
Q |
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| T |
7831556 |
gtagttttcctctttttgtttccatggttgttatattttcttgcatttgactttagttttctttgttgcagataatatagcaaatttataggagaatttg |
7831457 |
T |
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| Q |
212 |
gtcaagttgatcaaccatcttaagaaaatccctcttagtgtagccaacccaccagagaagct |
273 |
Q |
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| T |
7831456 |
gtcaagttgatcaaccatcttaagaaaatccctcttagtgtagccaacctaccagagaagct |
7831395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 7831394 - 7831336
Alignment:
| Q |
296 |
gactatcgttacaaaaaagagtaaggcgacactgaannnnnnngggtcctcctatgctt |
354 |
Q |
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| T |
7831394 |
gactatcgttacaaaaaagagtaaggcgacattgaatttttttgggtcctcctatgctt |
7831336 |
T |
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