View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16699_high_11 (Length: 332)
Name: NF16699_high_11
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_high_11 |
 | |
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| [»] scaffold0312 (2 HSPs) |
| | |
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| [»] scaffold1626 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 409615 - 409927
Alignment:
| Q |
1 |
aaacccttaacctgcttcctgtggaagatgccaaattagttttatatgttttcatcttgaaataacaaatagagtacaaataacataaacatagttggtt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
409615 |
aaacccttaacctgcttcctgtgaaagatgccaaattagttttatatgttttcatcttgaaataacaaatagagttcaaataacataaacataattggtt |
409714 |
T |
|
| Q |
101 |
tcataaccatacttggccatgacatttcctttaggagtatggaatccattaataagaacacctgtagcagttccacttggataaggtaatttagagtcta |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
409715 |
tcataatcatacttggccatgacatttcctttaggagtatggaatccattaataagaacacctgtagcagttccacttggataaggtaatttagagtcta |
409814 |
T |
|
| Q |
201 |
ttatcatcatctgttaaataacatagcaaacaatattccagttagtctaaacccaattcatcttaaactgaatattgtttgctacttgaatattcaagtc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
409815 |
ttatcatcatctgttaaataacatagcaaacaatattccagttagtctaaacccaattcatcttaaactgaatattgtttgctacttgaatattcaagtt |
409914 |
T |
|
| Q |
301 |
agtaccactgaat |
313 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
409915 |
agttccactgaat |
409927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 402368 - 402634
Alignment:
| Q |
1 |
aaacccttaacctgcttcctgtggaagatgccaaattagttttatatgttttcatcttgaaataacaaatagagtacaaataacataaacatagttggtt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
402368 |
aaacccttaacctgcttcctgtgaaagatgccaaattagttttatatgttttcatcttgaaataacaaatagagttcaaataacataaacataattggtt |
402467 |
T |
|
| Q |
101 |
tcataaccatacttggccatgacatttcctttaggagtatggaatccattaataagaacacctgtagcagttccacttggataaggtaatttagagtcta |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
402468 |
tcataatcatacttggccatgacatttcctttaggagtatggaatccattaataagaacaccagtagcagttccacttggataaggtaatttagagtcta |
402567 |
T |
|
| Q |
201 |
ttatcatcatctgttaaataacatagcaaacaatattccagttagtctaaacccaattcatcttaaa |
267 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||||||| |
|
|
| T |
402568 |
ttatcatcatctgttatttaacatagcaaacaatactcaagttaccctaaagtcaattcatcttaaa |
402634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 427417 - 427683
Alignment:
| Q |
1 |
aaacccttaacctgcttcctgtggaagatgccaaattagttttatatgttttcatcttgaaataacaaatagagtacaaataacataaacatagttggtt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
427417 |
aaacccttaacctgcttcctgtgaaagataccaatttagttttatatgttttcatcttgaaataacaaatagagtacaaataacataaacatagttggtt |
427516 |
T |
|
| Q |
101 |
tcataaccatacttggccatgacatttcctttaggagtatggaatccattaataagaacacctgtagcagttccacttggataaggtaatttagagtcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
427517 |
tcataaccatacttggccatgacatttcctttaggagtatggaatccattaataagaacacctgtagcagttccacttggataaggtaatttagagtcta |
427616 |
T |
|
| Q |
201 |
ttatcatcatctgttaaataacatagcaaacaatattccagttagtctaaacccaattcatcttaaa |
267 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | | ||||| ||||| |||||||||||||| |
|
|
| T |
427617 |
ttatcatcatctgttgtataacatagcaaacaacaatgaagttaccctaaattcaattcatcttaaa |
427683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 439951 - 440219
Alignment:
| Q |
1 |
aaacccttaacctgcttcctgtggaagatgccaaattagttttatatgttttcatcttgaaataacaaatagag--tacaaataacataaacatagttgg |
98 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||| || | |
|
|
| T |
439951 |
aaacccttaacctgcttcctgtgaaagatgccaaattagttttatatgttttcatcttgaaataacaaatatagaatacaaatagcacaaacataatttg |
440050 |
T |
|
| Q |
99 |
tttcataaccatacttggccatgacatttcctttaggagtatggaatccattaataagaacacctgtagcagttccacttggataaggtaatttagagtc |
198 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
440051 |
tttcataatcatacttggccatgacatttcctttaggagtatggaatccattaataagaacacctgtagcagttccacttggataaggtaatttagagtc |
440150 |
T |
|
| Q |
199 |
tattatcatcatctgttaaataacatagcaaacaatattccagttagtctaaacccaattcatcttaaa |
267 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
440151 |
tattatcatcatctgttatataacatagcaaacaatattcgagttagtctaaaccttattcatcttaaa |
440219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 3133 - 2867
Alignment:
| Q |
1 |
aaacccttaacctgcttcctgtggaagatgccaaattagttttatatgttttcatcttgaaataacaaatagagtacaaataacataaacatagttggtt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3133 |
aaacccttaacctgcttcctgtgaaagataccaatttagttttatatgttttcatcttgaaataacaaatagagtacaaataacataaacatagttggtt |
3034 |
T |
|
| Q |
101 |
tcataaccatacttggccatgacatttcctttaggagtatggaatccattaataagaacacctgtagcagttccacttggataaggtaatttagagtcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3033 |
tcataaccatacttggccatgacatttcctttaggagtatggaatccattaataagaacacctgtagcagttccacttggataaggtaatttagagtcta |
2934 |
T |
|
| Q |
201 |
ttatcatcatctgttaaataacatagcaaacaatattccagttagtctaaacccaattcatcttaaa |
267 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | | ||||| ||||| |||||||||||||| |
|
|
| T |
2933 |
ttatcatcatctgttgtataacatagcaaacaacaatgaagttaccctaaattcaattcatcttaaa |
2867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 164 - 313
Target Start/End: Complemental strand, 20792 - 20643
Alignment:
| Q |
164 |
gtagcagttccacttggataaggtaatttagagtctattatcatcatctgttaaataacatagcaaacaatattccagttagtctaaacccaattcatct |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20792 |
gtagcagttccacttggataaggtaatttagagtctattatcatcatctgttaaataacatagcaaacaatattccagttagtctaaacccaattcatct |
20693 |
T |
|
| Q |
264 |
taaactgaatattgtttgctacttgaatattcaagtcagtaccactgaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
20692 |
taaactgaatattgtttgctacttgaatattcaagttagttccactgaat |
20643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1626 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold1626
Description:
Target: scaffold1626; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 162 - 1
Alignment:
| Q |
1 |
aaacccttaacctgcttcctgtggaagatgccaaattagttttatatgttttcatcttgaaataacaaatagagtacaaataacataaacatagttggtt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
162 |
aaacccttaacctgcttcctgtgaaagatgccaaattagttttatatgttttcatcttgaaataacaaatagagttcaaataacataaacataattggtt |
63 |
T |
|
| Q |
101 |
tcataaccatacttggccatgacatttcctttaggagtatggaatccattaataagaacacc |
162 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
62 |
tcataatcatacttggccatgacatttcctttaggagtatggaatccattaataagaacacc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 42039953 - 42039838
Alignment:
| Q |
108 |
catacttggccatgacatttcctttaggagtatggaatccattaataagaacacctgtagcagttccacttggataaggtaatttagagtctattatcat |
207 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
42039953 |
catacttggccatcacatctcctttaggagtatggaatccattaatgagaacagcagtagcagttccacttggataagttaatttgtagtctataatcat |
42039854 |
T |
|
| Q |
208 |
catctgttaaataaca |
223 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
42039853 |
tatctgttaaagaaca |
42039838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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