View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16699_high_12 (Length: 307)

Name: NF16699_high_12
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16699_high_12
NF16699_high_12
[»] chr3 (1 HSPs)
chr3 (1-298)||(41849821-41850118)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 41849821 - 41850118
Alignment:
Q  1 caggcaacacccttgattttgttgagactaagtaaccttggcttattctcagttccatctaactcagcttctcctacaactacaacagaacaaacaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41849821 caggcaacacccttgattttgttgagactaagtaaccttggcttattctcagttccatctaactcagcttctcctacaactacaacagaacaaacaaatt 41849920  T
Q  101 tgaatgtcttggttattttacatgaagtaagcaatggtataaaatgaagagaaagaaatgaaagagagcgagaccagagcaagtgattgtgaagggtaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| |||||||||    
T  41849921 tgaatgtcttggttattttacatgaagtaagcaatggtataaaatgaagagaaagaaatgaaatagagtaagaccagagcaagtgattgtaaagggtaaa 41850020  T
Q  201 gcagaagtggtgaaacatggtcgtttggttgagtagttgcgtatggccaaactggttcgtgggagttgaattgaaaggttggccattcttctctctgc 298  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  41850021 gcagaagtggtgaaacatggtcgtttggttgagaagttgcgtatggacaaacttgttcgtgggagttgaattgaaaggttggccattcttctttctgc 41850118  T

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