View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16699_high_4 (Length: 643)
Name: NF16699_high_4
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 399
Target Start/End: Original strand, 52520509 - 52520896
Alignment:
| Q |
9 |
gtccaagaatataaggtcatttatgactttgtcctcccaattttgcatttttaattataatgataatataatataatatttctgaaggtgtgaaacgaaa |
108 |
Q |
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| T |
52520509 |
gtccaacaatataaggtcatttatgactttgtcctcccaattttgtatttttaattataattataata-------atatttcagaaggtgtgaaacgaaa |
52520601 |
T |
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| Q |
109 |
gggacctctcgctttcatcgtccttttgtatcgtcttgcggagaaccgaaaatcccgagccttacaatattttccttctgttttcatctannnnnnnnnn |
208 |
Q |
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| T |
52520602 |
gggacctctcgctttcatcgtccttttgtatcgtcttgcggagaaccgaaaatcccgagccttacaatattttccttccgttttcatctatttttatttt |
52520701 |
T |
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| Q |
209 |
nnnnnncaacaacccaaaatatggataacaaattaatggcttaaattattaagtgcattagtggtagaatttagttaa----taaattattatgactaac |
304 |
Q |
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| T |
52520702 |
tattttcaacaacccaaaatatggataacaaattaatggcttaaattattaagtgcattagtggtagaatttagttaattaataaattattatgactaac |
52520801 |
T |
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| Q |
305 |
ccaattttggttgaatgggtttattcactttcctaacttgattgaatcgtttactactaaatatgtttaggcttatcatcgtgtttgttttaatg |
399 |
Q |
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| T |
52520802 |
ccaattttggttgaatgggtttattcactttcctaacttgattggatcgtttactactaaatatgtttacgtttatcatcgtgtttgttttaatg |
52520896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 437 - 602
Target Start/End: Original strand, 52525315 - 52525478
Alignment:
| Q |
437 |
acgggtttggtaatccatagttcaatcaagaaataagttaatcttgtcaataattgttttacatagtaatgattaaaatcacaagtaaatgttattcctt |
536 |
Q |
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| T |
52525315 |
acggatttgataattcatagttcaatcaagaaataagttaatcttgtcaataattgttttacatagtaatgattaaaatcacaagtaaatgttattcc-- |
52525412 |
T |
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| Q |
537 |
gaaatatttgttatagaatggtttttctttttgttcttgtacctaaggacaaatctcaaaggcaat |
602 |
Q |
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| T |
52525413 |
gaaatatttgttatagaatggtttttctttttgttcttgtacctaaggacaaatctcaaaggcaat |
52525478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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