View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16699_high_6 (Length: 517)

Name: NF16699_high_6
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16699_high_6
NF16699_high_6
[»] chr1 (9 HSPs)
chr1 (17-257)||(49726317-49726558)
chr1 (374-508)||(49683100-49683234)
chr1 (366-504)||(49688010-49688148)
chr1 (366-508)||(49714351-49714493)
chr1 (374-508)||(49710709-49710844)
chr1 (380-508)||(49215372-49215500)
chr1 (380-508)||(49728548-49728676)
chr1 (374-508)||(49725126-49725260)
chr1 (307-361)||(49726275-49726329)
[»] chr6 (2 HSPs)
chr6 (386-489)||(31189573-31189676)
chr6 (407-488)||(31214205-31214286)
[»] scaffold0394 (1 HSPs)
scaffold0394 (396-446)||(2115-2165)
[»] chr7 (3 HSPs)
chr7 (371-441)||(33305159-33305229)
chr7 (396-432)||(31608433-31608469)
chr7 (398-446)||(31618445-31618493)
[»] chr4 (1 HSPs)
chr4 (396-446)||(15063369-15063419)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 49726558 - 49726317
Alignment:
Q  17 acagatacatgatgatagtagcagttgttgtataaggaggcatgaaaacaagaagaggtgttgtgagaacatgataaataatttgtgtggttctgtaatc 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49726558 acagatacatgatgatagtagcagttgttttataaggaggcatgaaaacaagaagaggtgttgtgagaacatgataaataatttgtgtggttctgtaatc 49726459  T
Q  117 tatagtgagtaataaataatgtttcagttgatatgatatactaaatatatgccataagacggaagcagtgcagagaaacagagaatggtcttgctatgca 216  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49726458 tatagtgagtaataaataatgtttcaattgatatgatatactaaatatatgccataagacggaagcagtggagagaaacagagaatggtcttgctatgca 49726359  T
Q  217 gccatttttgactgagtgtgtg-tttggcaaggtcataatag 257  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  49726358 gccatttttgactgagtgtgtgttttggcaaggtcataatag 49726317  T

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Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 374 - 508
Target Start/End: Complemental strand, 49683234 - 49683100
Alignment:
Q  374 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgt 473  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||||||||||||||||||||||||||    
T  49683234 gatacaatgctttcttttcttggacatattttagcaagtccaaaatctgaaatttttggacacaaatcatcgtcaagtaatatattatgaggttttatgt 49683135  T
Q  474 caaaatgtaatattctagtgttgcagcctctgtgc 508  Q
    |||||||||| ||||||||||||||||||||||||    
T  49683134 caaaatgtaagattctagtgttgcagcctctgtgc 49683100  T

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Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 366 - 504
Target Start/End: Complemental strand, 49688148 - 49688010
Alignment:
Q  366 caaaaatggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgagg 465  Q
    |||| |||||||| || |||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||    
T  49688148 caaatatggatacaatgctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaattctcatcaagtaatatattatgagg 49688049  T
Q  466 ttttatgtcaaaatgtaatattctagtgttgcagcctct 504  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  49688048 ttttatgtcaaaatgtaagattctagtgttgcagcctct 49688010  T

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Target: chr1; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 366 - 508
Target Start/End: Complemental strand, 49714493 - 49714351
Alignment:
Q  366 caaaaatggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgagg 465  Q
    |||| |||||||| || ||||||||||||||||||| |||||||||||| |||||||||||||| || |||||||| |||| ||||||||||||||||||    
T  49714493 caaatatggatacaatgctttcttttcttggacatactttagcaagtccgaaatctgaaattttaggacagaaatcttcatcaagtaatatattatgagg 49714394  T
Q  466 ttttatgtcaaaatgtaatattctagtgttgcagcctctgtgc 508  Q
    ||| |||||||||||||| ||||||||||| ||||||||||||    
T  49714393 tttaatgtcaaaatgtaagattctagtgttacagcctctgtgc 49714351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 374 - 508
Target Start/End: Complemental strand, 49710844 - 49710709
Alignment:
Q  374 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcc-tcatgaagtaatatattatgaggttttatg 472  Q
    ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||   ||||  ||||||||||||||||||||||||    
T  49710844 gatacaatgctttcttttcttagacatattttagcaagtccaaaatctgaaatttttggacaaaaattaatcatctagtaatatattatgaggttttatg 49710745  T
Q  473 tcaaaatgtaatattctagtgttgcagcctctgtgc 508  Q
    |||||||| || ||||||||||||||||||||||||    
T  49710744 tcaaaatgcaagattctagtgttgcagcctctgtgc 49710709  T

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Target: chr1; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 380 - 508
Target Start/End: Complemental strand, 49215500 - 49215372
Alignment:
Q  380 atactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaat 479  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||| |||   |||||||||||||||||| ||||||||||||    
T  49215500 atactttcttttcttgggcatattttagcaagtccaaaatctgaaattttcggacaaaaatcatcagctagtaatatattatgaggtcttatgtcaaaat 49215401  T
Q  480 gtaatattctagtgttgcagcctctgtgc 508  Q
    | || ||||||||||| ||||||||||||    
T  49215400 gcaagattctagtgttacagcctctgtgc 49215372  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 380 - 508
Target Start/End: Complemental strand, 49728676 - 49728548
Alignment:
Q  380 atactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaat 479  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||  || || || ||||| || |  || |||||||||||||||||||| |||||||    
T  49728676 atactttcttttcttggacatacttttgcaagtccaaaatccgaaaccttaggacaaaaatcatcgtctagcaatatattatgaggttttatatcaaaat 49728577  T
Q  480 gtaatattctagtgttgcagcctctgtgc 508  Q
    |||| ||| |||| ||||| ||| |||||    
T  49728576 gtaaaattttagtattgcaacctttgtgc 49728548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 508
Target Start/End: Complemental strand, 49725260 - 49725126
Alignment:
Q  374 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgt 473  Q
    ||||| ||||||||||||||||  || ||||| |||||||||||||| |||||| | |||  ||||| |||||  |  |  || ||||||||||||||||    
T  49725260 gataccatactttcttttcttgtgcaaatttttgcaagtccaaaatccgaaattctggggttgaaattctcatccaaaagaatgttatgaggttttatgt 49725161  T
Q  474 caaaatgtaatattctagtgttgcagcctctgtgc 508  Q
    ||||||| || |||||||| ||||||||| |||||    
T  49725160 caaaatgcaaaattctagtattgcagcctttgtgc 49725126  T

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Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 49726329 - 49726275
Alignment:
Q  307 aaggtcataataggacaagtcaacagtcaacagtggactatcttagtgtatatat 361  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  49726329 aaggtcataataggaaaagtcaacagtcaacagtggactatcttagtatatatat 49726275  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 489
Target Start/End: Original strand, 31189573 - 31189676
Alignment:
Q  386 tcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaata 485  Q
    |||||| ||||||| | ||| |||||||||||||||||||||||||| || |||| |||||  |  |  || ||||| ||||||||||| |||||||| |    
T  31189573 tctttttttggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaa 31189672  T
Q  486 ttct 489  Q
    ||||    
T  31189673 ttct 31189676  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 488
Target Start/End: Complemental strand, 31214286 - 31214205
Alignment:
Q  407 gcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattc 488  Q
    ||||||||||||||||| || ||||| || ||||  ||||  | ||| |||||||| |||||||| ||||||||||| ||||    
T  31214286 gcaagtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggttttatatcaaaatgtaaaattc 31214205  T

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Target: scaffold0394 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 446
Target Start/End: Original strand, 2115 - 2165
Alignment:
Q  396 gacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 446  Q
    |||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  2115 gacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat 2165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 33305229 - 33305159
Alignment:
Q  371 atggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatc 441  Q
    |||||||| || || || || ||| ||||||||| ||| |||||||||||||| ||||||||||| |||||    
T  33305229 atggatacaatgctatccttcctttgacatatttgagctagtccaaaatctgagatttttgggcaaaaatc 33305159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 432
Target Start/End: Original strand, 31608433 - 31608469
Alignment:
Q  396 gacatattttagcaagtccaaaatctgaaatttttgg 432  Q
    ||||||||||||||||||||||||| || ||||||||    
T  31608433 gacatattttagcaagtccaaaatcagatatttttgg 31608469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 31618445 - 31618493
Alignment:
Q  398 catattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 446  Q
    ||||||||||| |||||||||||||| |||||||| || ||||| ||||    
T  31618445 catattttagctagtccaaaatctgagatttttggacaaaaatcttcat 31618493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 15063419 - 15063369
Alignment:
Q  396 gacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 446  Q
    |||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  15063419 gacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat 15063369  T

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