View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16699_high_7 (Length: 478)
Name: NF16699_high_7
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 226 - 464
Target Start/End: Original strand, 52876140 - 52876378
Alignment:
| Q |
226 |
catttcaaggggatgcataattgtatcgtaactctcactttaaggtataacatatgtcttatttcttctcataaaaagtaaaatatttgttcttttttca |
325 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52876140 |
catttcaaggggatgcataattgtattgtaactctcactttaaggtataacatatgtcttatttcttctcataaaaagtaaaatatttgttcttttttca |
52876239 |
T |
|
| Q |
326 |
tattgtgtgcttgttaacttttcatttgtttttcaaatttatgagcagcaaacgtcccaattttggtcagaagactgtgaatttacctatgtttggagag |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52876240 |
tattgtgtgcttgttaacttttcatttgtttttcaaatttatgagcagcaaacgtcccaattttggtcagaagactgtgaatttacctatgtttggagag |
52876339 |
T |
|
| Q |
426 |
atttctattttctcactggtggtgttgctattctctgtg |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52876340 |
atttctattttctcactggtggtgttgctattctctgtg |
52876378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 52875931 - 52876071
Alignment:
| Q |
18 |
cttgagtctgtttatagttgtatacattttttatt--ctttcgagaatatttgtttgcctctgactctatttctccnnnnnnnnngttggatagattttt |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52875931 |
cttgagtctgtttatagttgtatacgtttttttttttctttcgagaatatttgtttgcctctgactctatttctcc-ttttttttgttggatagattttt |
52876029 |
T |
|
| Q |
116 |
ctttactataaaaaatgtatcatatgaaactagtcaattcaa |
157 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52876030 |
ctttactataaaaaatgtatcatatgaaattagtcaattcaa |
52876071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 256480 - 256424
Alignment:
| Q |
388 |
ttggtcagaagactgtgaatttacctatgtttggagagatttctattttctcactgg |
444 |
Q |
| |
|
||||||| ||||| |||||| ||||| | ||||| ||||||||||||||||| |||| |
|
|
| T |
256480 |
ttggtcaaaagaccgtgaatgtacctctatttggggagatttctattttctcgctgg |
256424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University