View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16699_high_8 (Length: 428)
Name: NF16699_high_8
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 16192767 - 16192375
Alignment:
| Q |
19 |
aggctataactacaactcatacaaaggggaatcaatcctttggttcttgatatataatattttgaggttaatatttggtttggtttctaaagttattggt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16192767 |
aggctataactacaactcatacaaagg--aatcaatcctttggttcttgatatataatattttgaggttaatatttggtttggtttctaaagttattggt |
16192670 |
T |
|
| Q |
119 |
aaagggtggtggaagttgaactgaaaagacaagaatatattcggttgtaggaaaagagtaaactttatacttaaacaaaatcacaaaatatataagaaac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16192669 |
aaagggtggtggaagttgaactgaaaagacaagaatatattcggttggaggaaaagagtaaactttatacttaaacaaaatcacaaaatatataagaaac |
16192570 |
T |
|
| Q |
219 |
tcactatatatgtagggaaggaaagaatgaagaatataagttgatgagtaaagtggtgactggggaatgagtggacaatgcattgtcccaatacgcgttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16192569 |
tcactatatatgtagggaaggaaagaatgaagaatataagttgatgagtaaagtggtgactggggaatgagtggacagtgcattgtcccaatacgcgttt |
16192470 |
T |
|
| Q |
319 |
ggttcaatcaacaactgg-nnnnnnnctaaatcttttaaatattttagtaggagattcatctcatggttatgagtattgaagaacacacaatatt |
412 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16192469 |
ggttcattcaacaactggaaaaaaaactaaatcttttaaatattttagtaggagattcatctcatggttatgagtattgaagaacacacaatatt |
16192375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University