View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16699_low_1 (Length: 939)
Name: NF16699_low_1
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 12 - 464
Target Start/End: Complemental strand, 28095175 - 28094725
Alignment:
| Q |
12 |
cacagacaaacacatctcagaataagaaacgtcaagaaaagttagttgcattcatgttgtcaccaacaccatcgttcactccatccatatgttttcgtca |
111 |
Q |
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| T |
28095175 |
cacagacaaacacatctcagaataagaaacgtcaagaaaagttagttgcattcatgttgtcaccaacaccatcgttcactccatccatatgttttcgtca |
28095076 |
T |
|
| Q |
112 |
ttttatcctttgttcttctgctttgtcctacaaccttgcttacaacaaagtgaaaatcatatcagggacnnnnnnngtaataagagaatggaagataaaa |
211 |
Q |
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| T |
28095075 |
ttttatcctttgttcttctgctttgtcctacaaccttgcttacaacaaagtgaaaatcatatcagggacaaaaaaagtaataagagaatggaagataaaa |
28094976 |
T |
|
| Q |
212 |
aagtaattagagtcatatttataccaagaattacatgatgcaaagccattactctaccaattacttaatagatattaatttcaaacatctcataattaca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094975 |
--gtaattagagtcatatttataccaagaattacatgatgcaaagccattattctaccaattacttaatagatattaatttcaaacatctcataattaca |
28094878 |
T |
|
| Q |
312 |
aaacaagataattactctgccgctggcacaaacatgagacatatcacaagagaataaggaatcaagagacggaaaaaacccaacgtatgccaattcattg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094877 |
aaacaagataattactctgccgctggcacaaacatgagacatatcacaagagaataaggaatcaagagacggaaaaaacccaacgtatgccaattcattg |
28094778 |
T |
|
| Q |
412 |
attcatgttagcaacacattcacaacattcatgttgacaattgtgatcatttt |
464 |
Q |
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| T |
28094777 |
attcatgttagcaacacattcacaacattcaagttgacaattgtgatcatttt |
28094725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 520 - 922
Target Start/End: Complemental strand, 28094669 - 28094275
Alignment:
| Q |
520 |
tggacagaaactccattgaattgcattacagaaaccgaacatgtagattcaatgttgccggtatttgctattaatattaaaatggtttaattagaaagtg |
619 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28094669 |
tggaaagaaactccattgaattgcattacagaaaccgaacatgtagattcaatgttgccagtatttgctattaatattaaaatggtttaattagaaagtg |
28094570 |
T |
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| Q |
620 |
atgtgagaagagttcaatgtaagccactgcaccataaa-ctaacccttgtcaaaacatttctccggtgctactcttcgttatatattgtaaaagatgtta |
718 |
Q |
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||||||||||||||||||| | | |||| |||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
28094569 |
atgtgagaagagttcaatgaatt-------attataactctaaaccttgtcaaaacatttctccagtgctactcttcattatatattgtaaaagatgtta |
28094477 |
T |
|
| Q |
719 |
tcaaactaagttagtagtaaacaaggatatgtaggccgagtgagctcatatgctcaagagtcaagacaaagtcatgatgacttattctaactctataaca |
818 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
28094476 |
tcaaactaagttagtagtaaacaaggatatgtaggccgagtgagctcatatgctcaagagtcaagacaaagtcatgatgacttattataactc--taaca |
28094379 |
T |
|
| Q |
819 |
taccaataatgataaatgcaaaacagtcatcactttgtcactcatacatgacatttgtagtatttctatatatgttgtgtcaacactccgatttccaagg |
918 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094378 |
taccaataatgataaatgcaaaacagtcatcactttgtcactcatacatgacatttgtagtatttctatatatgttgtgtcaacactccgatttccaagg |
28094279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 7035669 - 7035615
Alignment:
| Q |
278 |
aatagatattaatttcaaacatctcataattacaaaacaagataattactctgcc |
332 |
Q |
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|||||||||| ||||||||||||||| |||| ||||||||||||| |||| |||| |
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| T |
7035669 |
aatagatattgatttcaaacatctcacaattccaaaacaagataactactatgcc |
7035615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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