View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16699_low_11 (Length: 384)
Name: NF16699_low_11
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_low_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 49 - 384
Target Start/End: Original strand, 8402149 - 8402481
Alignment:
| Q |
49 |
ttcgacattgttgacattatgctgaaatggacttaaaagtcaaccaagttgttgatatttgtccaatttttctccaaattgggccaagtcaacaagatgt |
148 |
Q |
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| T |
8402149 |
ttcgacattgttgatattatgctgaaatggacttaaaagtcaaccaagatgttgatatttgttcaatttttctccaaattgggctaagtcaacaagatgt |
8402248 |
T |
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| Q |
149 |
tggtcaaccaattttctctaatgtaaaaatttaaaccaccaacaactgttttggcaacttccagttctagtataggtgtgaagcacctacttttcatttg |
248 |
Q |
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| T |
8402249 |
tggtcaaccaattttctctaatgtaaaaatttaaaccaccaacaactgttttggcaacttccagttttagtataggtgtgaagctcatactcttcatttg |
8402348 |
T |
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| Q |
249 |
tcttaacctctataggtaattgtcggcaaaatcgttactaannnnnnnatatttaactaatccaccaatgtaatctttaagtcgcctctaaataattgct |
348 |
Q |
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| T |
8402349 |
tctaaacctctataggtaattgtcggcaaaatcgttactaatttttttatatttaactaatccaccaatgtaatctgtaagtcgcctctaaataattgct |
8402448 |
T |
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| Q |
349 |
tgtgaaaggtgcattattctaaccgagtcaatgagt |
384 |
Q |
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| T |
8402449 |
tgtgaaaggtgc---attctaaccgagtcaatgagt |
8402481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 8427915 - 8427991
Alignment:
| Q |
115 |
tttttctccaaattgggccaagtcaacaagatgttggtcaaccaa-ttttctctaatgtaaaaatttaaaccaccaa |
190 |
Q |
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| T |
8427915 |
tttttctcctaattggaccaagtcaacaagatgttgattgaccaatttttctctaatgtaaaaatctaaaccaccaa |
8427991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 8428008 - 8428047
Alignment:
| Q |
247 |
tgtcttaacctctataggtaattgtcggcaaaatcgttac |
286 |
Q |
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| T |
8428008 |
tgtctaaacctttataggtaattgtcggcaaaatcgttac |
8428047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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