View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16699_low_12 (Length: 380)
Name: NF16699_low_12
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 46960008 - 46959640
Alignment:
| Q |
1 |
gattgaaaatgtaaatgtatat--ggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttggtaaccttagcattttc |
98 |
Q |
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| T |
46960008 |
gattgaaaatgtaaatgtatatatggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttggtaaccttagcattttc |
46959909 |
T |
|
| Q |
99 |
attctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctccaatatcacatttcagga |
198 |
Q |
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| T |
46959908 |
attctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctccaatatcacatttcagga |
46959809 |
T |
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| Q |
199 |
tatcgtggtggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgaattccatgcaagaatcaggtattgaattttaagatattt |
298 |
Q |
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| T |
46959808 |
tatcgtgatggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgacttccatgcaagaatcaggtattgaattttaagatattt |
46959709 |
T |
|
| Q |
299 |
ttgcagggtcgttttgtaagtctacatgtgcatgcagtgacacattattaatagttgtatttatttatc |
367 |
Q |
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| T |
46959708 |
ttgcagggtcattttgcaagtctacatgtgcatgcagtgacacattattaatagttgtatttatttatc |
46959640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 44522146 - 44522455
Alignment:
| Q |
1 |
gattgaaaatgtaaatgtatatggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttg----gtaaccttagcattt |
96 |
Q |
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|||| ||||||||| ||| |||||||||||||| ||||| | |||||| |||||||||||||||||||||||| || |||||| || ||||| |
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| T |
44522146 |
gattcaaaatgtaattgttgatggagcttatctttacaacactgataatggggtgagaatcaaaacatggcaggtaactttcttcgtaaccgtatcattt |
44522245 |
T |
|
| Q |
97 |
tcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctccaatatcacatttcag |
196 |
Q |
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||||||||||| || ||||| ||| ||| ||| | |||||||| || ||||||||||||||||||| |||| |||||||||| |||||||| ||| |
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| T |
44522246 |
tcattctcattctatttcacctagtgatga-caagtctattgagtcgagccaaattttctttagggtgggagtggttttgcctccaagatcacattccag |
44522344 |
T |
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| Q |
197 |
gatatcgtggtggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgaattccatgcaagaatcaggtattgaattttaagatat |
296 |
Q |
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||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
44522345 |
aatatcttaatggaaaatgtgtccaatccaataataatagatcaatactactgcgattcacgacatccatgcaagaatcaggtattgaattttaagatat |
44522444 |
T |
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| Q |
297 |
ttttgcagggt |
307 |
Q |
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||||||||||| |
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| T |
44522445 |
ttttgcagggt |
44522455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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