View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16699_low_13 (Length: 366)

Name: NF16699_low_13
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16699_low_13
NF16699_low_13
[»] chr6 (10 HSPs)
chr6 (11-351)||(2357928-2358268)
chr6 (63-321)||(2369019-2369277)
chr6 (185-350)||(2261198-2261363)
chr6 (153-321)||(2363273-2363441)
chr6 (85-350)||(2340160-2340425)
chr6 (237-350)||(14711309-14711422)
chr6 (182-350)||(2307479-2307647)
chr6 (236-336)||(14753379-14753479)
chr6 (182-350)||(2351613-2351781)
chr6 (258-348)||(2297382-2297472)
[»] chr3 (1 HSPs)
chr3 (183-350)||(4305942-4306109)
[»] scaffold0408 (1 HSPs)
scaffold0408 (236-336)||(584-684)
[»] chr4 (1 HSPs)
chr4 (85-348)||(5804059-5804322)


Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 2358268 - 2357928
Alignment:
Q  11 caaaggtttacatagtttgataatggccaataggttgaatcttccattgtttacatagtttcgtagcaattaacagacaaacatggtttaaccagaatct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2358268 caaaggtttacatagtttgataatggccaataggttgaatcttccattgtttacatagtttcgtagcaattaacagacaaacatggtttaaccagaatct 2358169  T
Q  111 caagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaataggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2358168 caagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaataggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagc 2358069  T
Q  211 caaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatca 310  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  2358068 caaaattaaatgcatcatttctagtccaaaagatatttcaggacaaatccttctaccacttccaaatggtaacaactcaaagtgacaccctcgaacatca 2357969  T
Q  311 acatctttatgagtgttaagaaatctttcaggtttaaactt 351  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  2357968 acatctttataagtgttaagaaatctttctggtttaaactt 2357928  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 63 - 321
Target Start/End: Complemental strand, 2369277 - 2369019
Alignment:
Q  63 acatagtttcgtagcaattaacagacaaacatggtttaaccagaatctcaagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaat 162  Q
    ||||| |||| ||||||||   |||||||| ||| ||||  ||||||||||| || || | ||||| |   || ||||||||   ||| |||||||||||    
T  2369277 acataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaat 2369178  T
Q  163 aggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatcctt 262  Q
    ||| ||||| |||| ||  ||||||||||| |||||||||||| |||||||| ||||||||| |||||  || ||||| || ||||| || |||||||||    
T  2369177 aggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattccagggcaaatcctt 2369078  T
Q  263 ctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatg 321  Q
    ||||||| |||||||||||| | |||||| ||||| |||| ||||||||| ||||||||    
T  2369077 ctaccacctccaaatggtaatagctcaaaatgatgacctctaacatcaacgtctttatg 2369019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 350
Target Start/End: Original strand, 2261198 - 2261363
Alignment:
Q  185 atttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggtaaca 284  Q
    |||||||| || || ||||||||||||||| ||||||| ||||| |  || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2261198 atttcaaaggagtgtaaaaaattagccaaagttaaatgaatcatatgaagaccaaaagatattcctggacatatccttctaccacttccaaatggtaaca 2261297  T
Q  285 actcaaagtgatg-ccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaact 350  Q
    ||||||| || || |||| |  ||||||||| ||| |||||| ||||||||||||| ||||| ||||    
T  2261298 actcaaaatgttgacccttg-gcatcaacatttttgtgagtggtaagaaatctttctggtttgaact 2261363  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 153 - 321
Target Start/End: Complemental strand, 2363441 - 2363273
Alignment:
Q  153 tcatatcaataggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctgg 252  Q
    ||||||||||||| ||||| |||| ||  ||||||||||| |||||||||||| |||||||| ||||||||| |||||  || || || |||||||| ||    
T  2363441 tcatatcaataggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccggg 2363342  T
Q  253 acaaatccttctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatg 321  Q
    ||||||||||||||||| |||||||||||| | |||||| ||||  |||| || ||||| |||||||||    
T  2363341 acaaatccttctaccacctccaaatggtaatagctcaaaatgattacctctaaaatcaatatctttatg 2363273  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 85 - 350
Target Start/End: Complemental strand, 2340425 - 2340160
Alignment:
Q  85 agacaaacatggtttaaccagaatctcaagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaataggctcactcgatgaatacaag 184  Q
    |||||||| ||||||||  |||||||||||||| |||||||||||   |||  |||||||| ||||  ||||||||| ||  |||   | || ||  |||    
T  2340425 agacaaacgtggtttaatgagaatctcaagtggagtagctttggaattcgttgatccaaaggcttcactcatatcaacagcatcaggtgttggatttaag 2340326  T
Q  185 atttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggtaaca 284  Q
    || ||||| |||||||||||| |||| |   | ||||||| |||||  |||||||| |||||||| |||||  ||||||||||||||||||||||||| |    
T  2340325 atatcaaaggaatgcaaaaaactagctagggtgaaatgcagcatttgaagtccaaacgatattccaggacatttccttctaccacttccaaatggtaata 2340226  T
Q  285 actcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaact 350  Q
      ||||| ||||  |||| |||||||||| ||||||||||| ||| ||| ||||| ||||| ||||    
T  2340225 gttcaaaatgattacctctaacatcaacagctttatgagtggtaaaaaacctttctggtttgaact 2340160  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 237 - 350
Target Start/End: Original strand, 14711309 - 14711422
Alignment:
Q  237 caaaagatattcctggacaaatccttctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatct 336  Q
    |||| |||||||| ||||| |||||||| ||||||||||||||||| | |||||| ||||  |||| |||||||||||||||||||||  ||||||||||    
T  14711309 caaaggatattccaggacacatccttcttccacttccaaatggtaaaagctcaaaatgattacctctaacatcaacatctttatgagttgtaagaaatct 14711408  T
Q  337 ttcaggtttaaact 350  Q
     |||||||| ||||    
T  14711409 ctcaggtttgaact 14711422  T

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Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 350
Target Start/End: Complemental strand, 2307647 - 2307479
Alignment:
Q  182 aagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggta 281  Q
    ||||| ||||| |||||||||||| |||| | ||| ||||||| |||||  |||||||  |||||||| || || ||||||||||||||||||||||| |    
T  2307647 aagatatcaaaggaatgcaaaaaactagctagaatgaaatgcagcatttgaagtccaagtgatattccagggcatatccttctaccacttccaaatggca 2307548  T
Q  282 acaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaact 350  Q
    | | | |||| | |   || | |||||||||||||||||||||| ||||||||||||| ||||| ||||    
T  2307547 atagcacaaaattactacccctaacatcaacatctttatgagtggtaagaaatctttctggtttgaact 2307479  T

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Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 336
Target Start/End: Original strand, 14753379 - 14753479
Alignment:
Q  236 ccaaaagatattcctggacaaatccttctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatc 335  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||   |||||||||||||||||||||  |||||||||    
T  14753379 ccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaagaaatc 14753478  T
Q  336 t 336  Q
    |    
T  14753479 t 14753479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 350
Target Start/End: Complemental strand, 2351781 - 2351613
Alignment:
Q  182 aagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggta 281  Q
    ||||| ||||| |||||||||||| | || | | | |||||||  ||||  ||||||||||||||| | |||||  ||||||||||||||||||||||||    
T  2351781 aagatatcaaaggaatgcaaaaaacttgctagagtgaaatgcacaatttgaagtccaaaagatattgcaggacacttccttctaccacttccaaatggta 2351682  T
Q  282 acaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaact 350  Q
      |  ||||| ||||  |||| |||||||||| ||||||||||| ||||||| ||||| ||||| ||||    
T  2351681 gtagttcaaaatgattacctctaacatcaacaactttatgagtggtaagaaacctttctggtttgaact 2351613  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 348
Target Start/End: Complemental strand, 2297472 - 2297382
Alignment:
Q  258 tccttctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaa 348  Q
    ||||||| |||||||||||||| ||||||||||| |  || || | || |||||||||||| | |||| ||||||| ||||||||||||||    
T  2297472 tccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgttagtggtaagaaacctttcaggtttaaa 2297382  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 183 - 350
Target Start/End: Complemental strand, 4306109 - 4305942
Alignment:
Q  183 agatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggtaa 282  Q
    |||||||||| |||||||||||| ||||||||  |||||||| |||||  || ||| |||||||||||||||||||||||||||||||||||||||||||    
T  4306109 agatttcaaaggaatgcaaaaaactagccaaagataaatgcaccatttgaaggccataagatattcctggacaaatccttctaccacttccaaatggtaa 4306010  T
Q  283 caactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaact 350  Q
     |||||||| ||||| ||   |||||||||| ||||||||||  ||||||| | ||| ||||| ||||    
T  4306009 taactcaaaatgatgacccttaacatcaacacctttatgagtagtaagaaaccgttctggtttgaact 4305942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 336
Target Start/End: Complemental strand, 684 - 584
Alignment:
Q  236 ccaaaagatattcctggacaaatccttctaccacttccaaatggtaacaactcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatc 335  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||   |||||||||||||||||||||  |||||||||    
T  684 ccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaagaaatc 585  T
Q  336 t 336  Q
    |    
T  584 t 584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 348
Target Start/End: Original strand, 5804059 - 5804322
Alignment:
Q  85 agacaaacatggtttaaccagaatctcaagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaataggctcactcgatgaatacaag 184  Q
    |||||||| ||||||||  ||||| |||||||| |||||||||      || ||||||||  |||| |||||||||||| | |||   | || ||  |||    
T  5804059 agacaaacgtggtttaatgagaatttcaagtggagtagctttgctatttgttaatccaaattcttcagtcatatcaataagttcaggtgttggatttaag 5804158  T
Q  185 atttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatattcctggacaaatccttctaccacttccaaatggtaaca 284  Q
    || ||||| |||||||||||| |||| | | | ||||||| |||||  ||||||||| ||||||| |||||  |||||||||||||||||||||||   |    
T  5804159 atatcaaaggaatgcaaaaaactagctagagtaaaatgcaccatttgaagtccaaaacatattccaggacatttccttctaccacttccaaatggttgta 5804258  T
Q  285 actcaaagtgatgccctcgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaa 348  Q
      ||||| ||||  || | |||||||| ||||||||||||  ||||||| ||||| || |||||    
T  5804259 gttcaaaatgattacccctaacatcaatatctttatgagttgtaagaaacctttctggcttaaa 5804322  T

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