View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16699_low_16 (Length: 262)
Name: NF16699_low_16
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 8402461 - 8402635
Alignment:
| Q |
13 |
attctaaccgagtcaatgagtgaatagaagatccatgatattgcattcttggttaaagaacctgtgataaactcatttttaaccattgcaaattcccata |
112 |
Q |
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| T |
8402461 |
attctaaccgagtcaatgagtgaatagaagagccatgatattgcattcttggttaaagaacctgtgataaactcatttt-aaccattgcaaattcccata |
8402559 |
T |
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| Q |
113 |
tttttgtggagaattttgcaatgtattcaatggtcgattccccaatatcccctatgaacatgggtaatttgggata |
188 |
Q |
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| T |
8402560 |
tttttgtggagaattttgcaatgtattcaatgctcgattccccaatatcccctatgaacatgggtaatttgggata |
8402635 |
T |
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Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 8428626 - 8428796
Alignment:
| Q |
45 |
ccatgatattgcattcttggttaaagaacctgtgataaactcatttttaaccattgcaaattcccatatttttgtggagaattttgcaatgtattcaatg |
144 |
Q |
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| T |
8428626 |
ccatgagaatgcattcttggttaaagaacttgggataaactcatttt-aactattgcaaattcccatatttttgtggagaattttgcaatgtgtttaatg |
8428724 |
T |
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| Q |
145 |
gtcgattccccaatatcccctatgaacatgggtaatttgggatatttagcgcctcttgggacttcaatatgt |
216 |
Q |
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| T |
8428725 |
attgattccccaatatcccctatgaacatggccaatttgggatatttagcgcctcttgggacttcaacatgt |
8428796 |
T |
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