View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16699_low_17 (Length: 237)
Name: NF16699_low_17
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46959349 - 46959129
Alignment:
| Q |
1 |
tgcctgcagtgatacctatccatgtgaaggactatatctcgaaaatatttatcttccatcatactttggagaaaatagaagatcttactgttggcaagct |
100 |
Q |
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| T |
46959349 |
tgcctgcagtgatacctatccatgtgaaggactacatctcgaaaatatttatcttccatcatactttggagaaaatagaagatcttactgttggcaagct |
46959250 |
T |
|
| Q |
101 |
catggttctacttcttctcaaggctgggtgaatcctcccgcttgtttttcaacaagtagtgatttgattcgacagaatgtcttgttagagacaaatcctg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46959249 |
catggttctacttcttctcaaggctgtgtgaatcctcccgcttgtttttcaacaagtagtgatttgattcgacagaatgtcttgttagagacaaatcctg |
46959150 |
T |
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| Q |
201 |
atattaattatgatttgtaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
46959149 |
atattaattatgatttgtaat |
46959129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 44522770 - 44522972
Alignment:
| Q |
1 |
tgcctgcagtgatacctatccatgtgaaggactatatctcgaaaatatttatcttccatcatactttggagaaaatagaagatcttactgttggcaagct |
100 |
Q |
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||||||||||||| | | |||||| |||||||||||||| |||||||||| ||||| |||||||||||||| ||||| ||||||||| |||||||||||| |
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| T |
44522770 |
tgcctgcagtgatgcttctccatgcgaaggactatatctggaaaatatttttcttcgatcatactttggaggaaatacaagatcttattgttggcaagct |
44522869 |
T |
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| Q |
101 |
catggttctacttcttctcaaggctgggtgaatcctcccgcttgtttttcaacaagtagtgatttgattcgacagaatgtcttgttagagacaaatcctg |
200 |
Q |
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||||| |||| |||| || | ||| | ||||| | || ||||| |||||||||||||| ||| |||||||||||||||||||| ||||||||| |
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| T |
44522870 |
catgg------ttctgctcagggttatgtgtaccctcctgtctgcttttcgacaagtagtgatttaattagacagaatgtcttgttagagccaaatcctg |
44522963 |
T |
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| Q |
201 |
atattaatt |
209 |
Q |
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|||||||| |
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| T |
44522964 |
ctattaatt |
44522972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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