View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16699_low_18 (Length: 227)
Name: NF16699_low_18
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 48403937 - 48404134
Alignment:
| Q |
16 |
cacagactgccataatgaactaaaggatgcaatattgactgcctcaacccctagcgcagagagattacgggcatactcctggtgacaatacgcaagatga |
115 |
Q |
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| T |
48403937 |
cacagactgccataatgaactaaaggatgcaatattgactgcctcaacccctagcgcagagagattacgggcatactcctggtgacaatacgcaagatga |
48404036 |
T |
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| Q |
116 |
aggttattatctaaaagaaagaattcacagtttgcaggacattgagtttaaaaaatcatttcaaaatcaaggcatccatgtcttgcatgttgcatgtg |
213 |
Q |
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| T |
48404037 |
aggttattatctaaaagaaagaattcacagtttgcaggacattgagtttaaaaaatcatttcaaaatcaaggcatccatgtcttgcatgttgcatgtg |
48404134 |
T |
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Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 42831313 - 42831117
Alignment:
| Q |
16 |
cacagactgccataatgaactaaaggatgcaatattgactgcctcaacccctagcgcagagagattacgggcatactcctggtgacaatacgcaagatga |
115 |
Q |
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|||| ||||||||||||||| | |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| | |||| || |
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| T |
42831313 |
cacacactgccataatgaacgataggatgcaatattgcttgcttcaatccctagcgcagagagattacgggcatactcctggtgacaatatgtaagagga |
42831214 |
T |
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| Q |
116 |
aggttattatctaaaagaaagaattcacagtttgcaggacattgagtttaaaaaatcatttcaaaatcaaggcatccatgtcttgcatgttgcatgtg |
213 |
Q |
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| T |
42831213 |
aggttattatctaaaagaaagcattcacggtttgcaggacattgacttt-aaaattcatttcaaaatcatggcatccatgtcttgcatgttgcatgtg |
42831117 |
T |
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