View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16699_low_2 (Length: 809)
Name: NF16699_low_2
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 679; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 12 - 794
Target Start/End: Original strand, 4721114 - 4721896
Alignment:
| Q |
12 |
atcatctctaaccgctttcaaaacctagaggcagttatcaacatatccccaactatataagtgtgactcagcatcatgatcaaggtacaatctcattcac |
111 |
Q |
| |
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|||||||||| | |||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
4721114 |
atcatctctagcggctttcaaaacctagaggcagttatcaacata--ctcgactatataagtgtgactcaacatcatgatcaaagtacaatctcattcac |
4721211 |
T |
|
| Q |
112 |
ccatattttgcacacaatccacctctcgcacatacagacttgagggtgcacaattctcctctactacggaagctgcttagcactgcgaaccaccgcaata |
211 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
4721212 |
ccattttttgcacacaatccacctctcgcacatacagacttgagggtgcacaattctcctctactactgaagctgcttagcactgtgaaccactgcaata |
4721311 |
T |
|
| Q |
212 |
gcagtcatcctcaccagagaaccaccagcatgtttcttcaatcttcaacgaacaaatcaaaagtaaatgtcgaataataaaatggcacaacatgagaaga |
311 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4721312 |
gcagtcatcctcaccagagaaccaccagcatgtttcttcaatcttcaactaacaaatcaaaagtaaatgtcgaataataaaatggcacaacatgagaaga |
4721411 |
T |
|
| Q |
312 |
tccagattaaagagtatgcaccatgacgacaaatggaatatcatggcgataacccaacataaccacctaccaaattcaacatatatacaaatacgcacgg |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | |
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| T |
4721412 |
tccagattaaagagtatgcaccatgacgacaaatggaatatcatggcgataacccaacataaacacctaccatattcaacatatatacaaatacgcacag |
4721511 |
T |
|
| Q |
412 |
acaagcaaaacagataggcatcttctctgctaaaaggaacgtatgaattaccaaaatctaagataaggtattagtatcaaagtcgatataatga--tcaa |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |
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| T |
4721512 |
acaagcaaaacagataggcatcttctctgctaaaaggaatgtatgaattaccaaaatctaagataaggtattagtatcaaagtcgatgtagtgatgtcaa |
4721611 |
T |
|
| Q |
510 |
ttacaaaatattaacattagatatgatgtattcatatagataaggaattatgatcaaagcattcttcacgataagttgttttcatctatgcatcaaatac |
609 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4721612 |
ttacaaaatattaacattagatatgatgtattcatctagataaggaattatgatcaaagcattcttcacgataagttgttttcatctatgcatcaaatac |
4721711 |
T |
|
| Q |
610 |
catgtgatcgaaattggaagcaaaacgtagaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttcttttaacgtggtcctatcttc |
709 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |
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| T |
4721712 |
catgtgatcgaaattggaagcaaaacgtagaatatgaggatcttgattcttaattgcattcgaatgatatatgttcttcttttaacatggtcttatcttc |
4721811 |
T |
|
| Q |
710 |
aacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttt |
794 |
Q |
| |
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| T |
4721812 |
aacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttt |
4721896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 413 - 792
Target Start/End: Original strand, 54923478 - 54923862
Alignment:
| Q |
413 |
caagcaaaacagataggcatcttctctgctaaaaggaacgtatgaattac---caaaatctaagataaggtattagtatcaaagtcgatataatgat--c |
507 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||| ||| ||||||||| |||| | ||||| | |
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| T |
54923478 |
caagcaaaacagataggtatcttctctgctaaaaggaaaatatgaattactaccaaaatcttagataaggaattggtatcaaagccgatgttatgatgtc |
54923577 |
T |
|
| Q |
508 |
aattacaaaatattaacattagatatgatgtattcatatagataaggaattatgatcaaagcattcttcacgataagttgttttcatctatgcatcaaat |
607 |
Q |
| |
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||||| | ||||||||||||| || || ||||||| || ||||||||||| |||||||||| |||| |||||||||||| |||| |||| |
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| T |
54923578 |
tattaccatatattaacattagctacaatatattcatttatataaggaattaatatcaaagcatatgtcacctcgtactgttttcatctaagcattaaat |
54923677 |
T |
|
| Q |
608 |
accatgtgatcgaaattggaagcaa-aacgtagaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttcttttaacgtggtcctatc |
706 |
Q |
| |
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||||||| || || | || | | ||| ||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||| |
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| T |
54923678 |
accatgtcc-cgtaagtaaaaacgacaacttagaagatgaggatcttgattcttaattgtcttcgaataatatatgttcttcttttaatgtggtcctatc |
54923776 |
T |
|
| Q |
707 |
ttcaacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctt |
792 |
Q |
| |
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||||| || ||||||| | |||| |||||||||| |||||||| |||||| ||||||||| |||||||||| || |||||||| |
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| T |
54923777 |
ttcaataacagatacccaactttctgcaactctggtaactcttccttctgagagctcaactaaagtaaaggctcttgctgtacctt |
54923862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 713
Target Start/End: Original strand, 54916016 - 54916066
Alignment:
| Q |
663 |
ttgcattcaaatgatatatgttcttcttttaacgtggtcctatcttcaaca |
713 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||||| |||||||| ||||||||| |
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|
| T |
54916016 |
ttgccttcaaataatacatgttcttcttttaaggtggtcctgtcttcaaca |
54916066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 10597480 - 10597406
Alignment:
| Q |
64 |
ctatataagtgtgactcagcatcatgatcaaggtacaatctcattcacccatattttgcacacaatccacctctc |
138 |
Q |
| |
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||||||||| |||||||||| ||| | |||||||||| | ||||||||||| |||| |||||||||||||||||| |
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| T |
10597480 |
ctatataagcgtgactcagcgtcacgctcaaggtacactttcattcacccaaatttcgcacacaatccacctctc |
10597406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 21923758 - 21923668
Alignment:
| Q |
63 |
actatataagtgtgactcagcatcatgatcaaggtacaatctcattcacccatattttgcacacaatccacctctcgcacatacagacttga |
154 |
Q |
| |
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|||||||||| |||||||||| | | | |||||||||||| |||||||||| ||||||| ||||||||||||| || |||| ||||||| |
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| T |
21923758 |
actatataagcgtgactcagctttacgccgaaggtacaatctgattcacccat-ttttgcaaacaatccacctctttcatataccgacttga |
21923668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 5678005 - 5678075
Alignment:
| Q |
64 |
ctatataagtgtgactcagcatcatgatcaaggtacaatctcattcaccca-tattttgcacacaatccac |
133 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||||||||||||||||| | | ||||||||||||||||| |
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| T |
5678005 |
ctatataaccgtgactcagcgtcacagtcaaggtacaatctcattcaccaatttttttgcacacaatccac |
5678075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 5703057 - 5703127
Alignment:
| Q |
64 |
ctatataagtgtgactcagcatcatgatcaaggtacaatctcattcaccca-tattttgcacacaatccac |
133 |
Q |
| |
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|||||||| |||||||||| ||| |||||||||||||||||||||| | | ||||||||||||||||| |
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| T |
5703057 |
ctatataaccgtgactcagcgtcacagtcaaggtacaatctcattcaccaatttttttgcacacaatccac |
5703127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 30808585 - 30808676
Alignment:
| Q |
64 |
ctatataagtgtgactcagcatcatgatcaaggtacaatctcattcacccatattttgcacacaatccacctctcgcacatacagacttgag |
155 |
Q |
| |
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||||||||| ||||||||||||| | ||||| |||| | | ||||||||| ||| |||||||||||||||| ||||||| |||||||| |
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| T |
30808585 |
ctatataagcatgactcagcatcacgctcaagatacacttttattcacccagttttcacacacaatccacctctttcacataccgacttgag |
30808676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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