View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16699_low_21 (Length: 216)
Name: NF16699_low_21
Description: NF16699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16699_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 40943168 - 40942969
Alignment:
| Q |
1 |
catacgcttcacctcatcaaggtgactgcctttcattgcctcagctgccacaccccaattcaaaggatcagcttcattcactttcatgttattattctta |
100 |
Q |
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| T |
40943168 |
catacgtttcacttcatccaagtgactgcctttcattgcttcagctgccacaccccaattcaaaggatcagcttcattcactttcatgttattattctta |
40943069 |
T |
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| Q |
101 |
gcatgaatcaaacagaatgattcattggcactgttttttgtgatagctgctgatattgtttccatatcttaattgataataattaatgttccttaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40943068 |
gcatgaatcaaacagaatgattcattggcactgttttttgtgatagctgctgatattgtttccatatcttaattgataataattaatgttccttaatttt |
40942969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 40970235 - 40970064
Alignment:
| Q |
29 |
cctttcattgcctcagctgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcatgaatcaaacagaatgattcattgg |
128 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40970235 |
cctttcattgcttcagctgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcatgaatcaaacagaatgattcattgg |
40970136 |
T |
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| Q |
129 |
cactgttttttgtgatagctgctgatattgtttccatatcttaattgataataattaatgttccttaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40970135 |
cactgttttttgtgatagctgctgatattgtttccatatcttaattgataataattaatgttccttaatttt |
40970064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 40956487 - 40956323
Alignment:
| Q |
1 |
catacgcttcacctcatcaaggtgactgcctttcattgcctcagctgccacaccccaattcaaaggatcagcttcattcactttcatgttattattctta |
100 |
Q |
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|||||| ||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40956487 |
catacgtttcacttcatctatgtgactgcctttcattgcttcagctgccacaccccaattcaaaggatcagcttcattcactttcatgttattattctta |
40956388 |
T |
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| Q |
101 |
gcatgaatcaaacagaatgattcattggcactgttttttgtgatagctgctgatattgtttccat |
165 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40956387 |
gcatgaatcaaacagaatgattcattggcactgttttttgtgatagctgctgatattgtttccat |
40956323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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